Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FPV entry

There are 4 chains in PDB entry 5FPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 12	LYS 356
B	LEU 9	LYS 356
C	LEU 9	LYS 356
D	LEU 9	LEU 239

There are131 helices in PDB entry 5FPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	26	Right-handed alpha
Helix 2	2	A	27	38	Right-handed alpha
Helix 3	3	A	39	43	Right-handed 310
Helix 4	4	A	95	104	Right-handed alpha
Helix 5	5	A	114	126	Right-handed alpha
Helix 6	6	A	156	161	Right-handed 310
Helix 7	7	A	191	195	Right-handed 310
Helix 8	8	A	213	215	Right-handed 310
Helix 9	9	A	216	228	Right-handed alpha
Helix 10	10	A	228	235	Right-handed alpha
Helix 11	11	A	237	242	Right-handed 310
Helix 12	12	A	247	254	Right-handed alpha
Helix 13	13	A	296	304	Right-handed alpha
Helix 14	14	A	318	326	Right-handed alpha
Helix 15	15	A	329	335	Right-handed alpha
Helix 16	16	A	348	355	Right-handed 310
Helix 17	17	B	21	26	Right-handed alpha
Helix 18	18	B	27	38	Right-handed alpha
Helix 19	19	B	39	43	Right-handed 310
Helix 20	20	B	95	104	Right-handed alpha
Helix 21	21	B	114	126	Right-handed alpha
Helix 22	22	B	156	162	Right-handed 310
Helix 23	23	B	191	195	Right-handed 310
Helix 24	24	B	213	215	Right-handed 310
Helix 25	25	B	216	228	Right-handed alpha
Helix 26	26	B	228	235	Right-handed alpha
Helix 27	27	B	237	242	Right-handed 310
Helix 28	28	B	247	254	Right-handed alpha
Helix 29	29	B	296	304	Right-handed alpha
Helix 30	30	B	318	326	Right-handed alpha
Helix 31	31	B	329	335	Right-handed alpha
Helix 32	32	B	348	355	Right-handed 310
Helix 33	33	C	21	26	Right-handed alpha
Helix 34	34	C	27	38	Right-handed alpha
Helix 35	35	C	39	43	Right-handed 310
Helix 36	36	C	95	104	Right-handed alpha
Helix 37	37	C	114	126	Right-handed alpha
Helix 38	38	C	156	162	Right-handed 310
Helix 39	39	C	191	195	Right-handed 310
Helix 40	40	C	213	215	Right-handed 310
Helix 41	41	C	216	228	Right-handed alpha
Helix 42	42	C	228	235	Right-handed alpha
Helix 43	43	C	237	242	Right-handed 310
Helix 44	44	C	247	254	Right-handed alpha
Helix 45	45	C	296	304	Right-handed alpha
Helix 46	46	C	318	326	Right-handed alpha
Helix 47	47	C	329	335	Right-handed alpha
Helix 48	48	C	348	355	Right-handed 310
Helix 49	49	D	21	26	Right-handed alpha
Helix 50	50	D	27	38	Right-handed alpha
Helix 51	51	D	39	43	Right-handed 310
Helix 52	52	D	95	104	Right-handed alpha
Helix 53	53	D	114	126	Right-handed alpha
Helix 54	54	D	156	162	Right-handed 310
Helix 55	55	D	191	195	Right-handed 310
Helix 56	56	D	213	215	Right-handed 310
Helix 57	57	D	216	228	Right-handed alpha
Helix 58	58	D	228	235	Right-handed alpha
Helix 59	59	D	237	242	Right-handed 310
Helix 60	60	D	247	254	Right-handed alpha
Helix 61	61	D	296	304	Right-handed alpha
Helix 62	62	D	318	326	Right-handed alpha
Helix 63	63	D	329	334	Right-handed alpha
Helix 64	64	D	348	355	Right-handed 310
Helix 65	65	E	21	26	Right-handed alpha
Helix 66	66	E	27	38	Right-handed alpha
Helix 67	67	E	39	43	Right-handed 310
Helix 68	68	E	95	104	Right-handed alpha
Helix 69	69	E	114	126	Right-handed alpha
Helix 70	70	E	156	162	Right-handed 310
Helix 71	71	E	191	195	Right-handed 310
Helix 72	72	E	213	215	Right-handed 310
Helix 73	73	E	216	228	Right-handed alpha
Helix 74	74	E	228	235	Right-handed alpha
Helix 75	75	E	237	242	Right-handed 310
Helix 76	76	E	247	254	Right-handed alpha
Helix 77	77	E	296	304	Right-handed alpha
Helix 78	78	E	318	326	Right-handed alpha
Helix 79	79	E	329	335	Right-handed alpha
Helix 80	80	E	348	355	Right-handed 310
Helix 81	81	F	21	26	Right-handed alpha
Helix 82	82	F	27	38	Right-handed alpha
Helix 83	83	F	39	43	Right-handed 310
Helix 84	84	F	95	104	Right-handed alpha
Helix 85	85	F	114	126	Right-handed alpha
Helix 86	86	F	156	162	Right-handed 310
Helix 87	87	F	191	195	Right-handed 310
Helix 88	88	F	213	215	Right-handed 310
Helix 89	89	F	216	228	Right-handed alpha
Helix 90	90	F	228	235	Right-handed alpha
Helix 91	91	F	237	242	Right-handed 310
Helix 92	92	F	247	254	Right-handed alpha
Helix 93	93	F	296	304	Right-handed alpha
Helix 94	94	F	318	326	Right-handed alpha
Helix 95	95	F	329	335	Right-handed alpha
Helix 96	96	F	348	355	Right-handed 310
Helix 97	97	G	21	26	Right-handed alpha
Helix 98	98	G	27	38	Right-handed alpha
Helix 99	99	G	39	43	Right-handed 310
Helix 100	100	G	95	104	Right-handed alpha
Helix 101	101	G	114	126	Right-handed alpha
Helix 102	102	G	156	158	Right-handed 310
Helix 103	103	G	159	164	Right-handed alpha
Helix 104	104	G	191	195	Right-handed 310
Helix 105	105	G	213	215	Right-handed 310
Helix 106	106	G	216	228	Right-handed alpha
Helix 107	107	G	228	235	Right-handed alpha
Helix 108	108	G	237	242	Right-handed 310
Helix 109	109	G	247	254	Right-handed alpha
Helix 110	110	G	296	304	Right-handed alpha
Helix 111	111	G	318	326	Right-handed alpha
Helix 112	112	G	329	335	Right-handed alpha
Helix 113	113	G	348	355	Right-handed 310
Helix 114	114	H	21	26	Right-handed alpha
Helix 115	115	H	27	38	Right-handed alpha
Helix 116	116	H	39	43	Right-handed 310
Helix 117	117	H	60	65	Right-handed 310
Helix 118	118	H	95	104	Right-handed alpha
Helix 119	119	H	114	126	Right-handed alpha
Helix 120	120	H	150	154	Right-handed 310
Helix 121	121	H	156	161	Right-handed 310
Helix 122	122	H	191	195	Right-handed 310
Helix 123	123	H	213	215	Right-handed 310
Helix 124	124	H	216	228	Right-handed alpha
Helix 125	125	H	228	235	Right-handed alpha
Helix 126	126	H	237	242	Right-handed 310
Helix 127	127	H	247	254	Right-handed alpha
Helix 128	128	H	296	304	Right-handed alpha
Helix 129	129	H	318	326	Right-handed alpha
Helix 130	130	H	329	335	Right-handed alpha
Helix 131	131	H	348	355	Right-handed 310

There are 24 sheets in PDB entry 5FPV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, DA, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB, HC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	45	48	parallel
Strand 3	A	268	271	anti-parallel
Strand 4	A	196	204	anti-parallel
Strand 5	A	285	292	anti-parallel
Strand 6	A	176	180	anti-parallel
Strand 7	A	132	138	anti-parallel
Strand 8	A	72	79	anti-parallel
Strand 9	A	82	89	anti-parallel
Strand 10	A	244	246	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	93	94	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	276	281	anti-parallel
Strand 3	A	207	212	anti-parallel
Strand 4	A	259	263	anti-parallel

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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	45	48	parallel
Strand 3	B	268	271	anti-parallel
Strand 4	B	196	204	anti-parallel
Strand 5	B	285	292	anti-parallel
Strand 6	B	176	180	anti-parallel
Strand 7	B	132	138	anti-parallel
Strand 8	B	72	79	anti-parallel
Strand 9	B	82	89	anti-parallel
Strand 10	B	244	246	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	93	94	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	189	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	259	263	anti-parallel

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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	45	48	parallel
Strand 3	C	268	271	anti-parallel
Strand 4	C	196	204	anti-parallel
Strand 5	C	285	292	anti-parallel
Strand 6	C	176	180	anti-parallel
Strand 7	C	132	138	anti-parallel
Strand 8	C	72	79	anti-parallel
Strand 9	C	82	89	anti-parallel
Strand 10	C	244	246	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	93	94	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	189	first strand
Strand 2	C	276	281	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	259	263	anti-parallel

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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	45	48	parallel
Strand 3	D	268	271	anti-parallel
Strand 4	D	196	204	anti-parallel
Strand 5	D	285	292	anti-parallel
Strand 6	D	176	180	anti-parallel
Strand 7	D	132	138	anti-parallel
Strand 8	D	72	79	anti-parallel
Strand 9	D	82	89	anti-parallel
Strand 10	D	244	246	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	93	94	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	189	first strand
Strand 2	D	276	281	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	259	263	anti-parallel

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There are 10 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	45	48	parallel
Strand 3	E	268	271	anti-parallel
Strand 4	E	196	204	anti-parallel
Strand 5	E	285	292	anti-parallel
Strand 6	E	176	180	anti-parallel
Strand 7	E	132	138	anti-parallel
Strand 8	E	72	79	anti-parallel
Strand 9	E	82	89	anti-parallel
Strand 10	E	244	246	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	93	94	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	189	first strand
Strand 2	E	276	281	anti-parallel
Strand 3	E	207	212	anti-parallel
Strand 4	E	259	263	anti-parallel

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There are 10 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	45	48	parallel
Strand 3	F	268	271	anti-parallel
Strand 4	F	196	204	anti-parallel
Strand 5	F	285	292	anti-parallel
Strand 6	F	176	180	anti-parallel
Strand 7	F	132	138	anti-parallel
Strand 8	F	72	79	anti-parallel
Strand 9	F	82	89	anti-parallel
Strand 10	F	244	246	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	93	94	anti-parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	189	first strand
Strand 2	F	276	281	anti-parallel
Strand 3	F	207	212	anti-parallel
Strand 4	F	259	263	anti-parallel

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There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	45	48	parallel
Strand 3	G	268	271	anti-parallel
Strand 4	G	196	204	anti-parallel
Strand 5	G	285	292	anti-parallel
Strand 6	G	176	180	anti-parallel
Strand 7	G	132	138	anti-parallel
Strand 8	G	72	79	anti-parallel
Strand 9	G	82	89	anti-parallel
Strand 10	G	244	246	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	93	94	anti-parallel

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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	189	first strand
Strand 2	G	276	281	anti-parallel
Strand 3	G	207	212	anti-parallel
Strand 4	G	259	263	anti-parallel

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There are 10 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	45	48	parallel
Strand 3	H	268	271	anti-parallel
Strand 4	H	196	204	anti-parallel
Strand 5	H	285	292	anti-parallel
Strand 6	H	176	180	anti-parallel
Strand 7	H	132	138	anti-parallel
Strand 8	H	72	79	anti-parallel
Strand 9	H	82	89	anti-parallel
Strand 10	H	244	246	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	93	94	anti-parallel

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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	189	first strand
Strand 2	H	276	281	anti-parallel
Strand 3	H	207	212	anti-parallel
Strand 4	H	259	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPV