Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FPW entry

There are 3 chains in PDB entry 5FPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8SER 314
B
 ALA 1008GLN 1315
C
 ALA 2008GLN 2315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5FPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
45 47Right-handed 310
Helix 4
4
A
63 69Right-handed alpha
Helix 5
5
A
77 81Right-handed alpha
Helix 6
6
A
84 89Right-handed 310
Helix 7
7
A
98 115Right-handed alpha
Helix 8
8
A
124 132Right-handed alpha
Helix 9
9
A
133 135Right-handed 310
Helix 10
10
A
137 141Right-handed 310
Helix 11
11
A
143 154Right-handed alpha
Helix 12
12
A
216 228Right-handed alpha
Helix 13
13
A
239 241Right-handed 310
Helix 14
14
A
298 302Right-handed 310
Helix 15
15
B
1012 1023Right-handed alpha
Helix 16
16
B
1039 1044Right-handed alpha
Helix 17
17
B
1045 1047Right-handed 310
Helix 18
18
B
1063 1068Right-handed alpha
Helix 19
19
B
1077 1081Right-handed alpha
Helix 20
20
B
1084 1089Right-handed 310
Helix 21
21
B
1098 1115Right-handed alpha
Helix 22
22
B
1124 1132Right-handed alpha
Helix 23
23
B
1133 1135Right-handed 310
Helix 24
24
B
1137 1141Right-handed 310
Helix 25
25
B
1143 1154Right-handed alpha
Helix 26
26
B
1216 1228Right-handed alpha
Helix 27
27
B
1239 1241Right-handed 310
Helix 28
28
B
1298 1302Right-handed 310
Helix 29
29
C
2012 2023Right-handed alpha
Helix 30
30
C
2039 2044Right-handed alpha
Helix 31
31
C
2045 2047Right-handed 310
Helix 32
32
C
2063 2069Right-handed alpha
Helix 33
33
C
2077 2081Right-handed alpha
Helix 34
34
C
2084 2089Right-handed 310
Helix 35
35
C
2098 2115Right-handed alpha
Helix 36
36
C
2124 2132Right-handed alpha
Helix 37
37
C
2137 2141Right-handed 310
Helix 38
38
C
2143 2154Right-handed alpha
Helix 39
39
C
2216 2228Right-handed alpha
Helix 40
40
C
2239 2241Right-handed 310
Helix 41
41
C
2298 2302Right-handed 310
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There are 13 sheets in PDB entry 5FPW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, CE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
243 246anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
255 269parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
306 311anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
255 269anti-parallel
Strand 5
A
272 278anti-parallel
Strand 6
A
290 294anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
306 311anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
255 269anti-parallel
Strand 5
A
75 76parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1027 1029first strand
Strand 2
B
1243 1246anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1075 1076first strand
Strand 2
B
1255 1269parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1207 1213first strand
Strand 2
B
1306 1311anti-parallel
Strand 3
B
1230 1237anti-parallel
Strand 4
B
1255 1269anti-parallel
Strand 5
B
1272 1278anti-parallel
Strand 6
B
1290 1294anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1207 1213first strand
Strand 2
B
1306 1311anti-parallel
Strand 3
B
1230 1237anti-parallel
Strand 4
B
1255 1269anti-parallel
Strand 5
B
1075 1076parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2027 2029first strand
Strand 2
C
2243 2246anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2075 2076first strand
Strand 2
C
2255 2269parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2207 2213first strand
Strand 2
C
2306 2311anti-parallel
Strand 3
C
2230 2237anti-parallel
Strand 4
C
2255 2269anti-parallel
Strand 5
C
2272 2278anti-parallel
Strand 6
C
2290 2294anti-parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2207 2213first strand
Strand 2
C
2306 2311anti-parallel
Strand 3
C
2230 2237anti-parallel
Strand 4
C
2255 2269anti-parallel
Strand 5
C
2075 2076parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2156 2157first strand
Strand 2
C
2204 2205anti-parallel
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