Analysis of interatomic Contacts of Structural Units in PDB entry:
5FQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FQ8 entry

There are 2 chains in PDB entry 5FQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	LYS 480
B	GLU 37	ALA 843

There are101 helices in PDB entry 5FQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	17	Right-handed 310
Helix 2	2	A	18	23	Right-handed alpha
Helix 3	3	A	23	35	Right-handed alpha
Helix 4	4	A	36	46	Right-handed alpha
Helix 5	5	A	58	63	Right-handed alpha
Helix 6	6	A	67	71	Right-handed 310
Helix 7	7	A	73	83	Right-handed alpha
Helix 8	8	A	83	95	Right-handed alpha
Helix 9	9	A	97	120	Right-handed alpha
Helix 10	10	A	129	133	Right-handed 310
Helix 11	11	A	140	157	Right-handed alpha
Helix 12	12	A	174	196	Right-handed alpha
Helix 13	13	A	199	214	Right-handed alpha
Helix 14	14	A	234	242	Right-handed alpha
Helix 15	15	A	251	261	Right-handed alpha
Helix 16	16	A	263	268	Right-handed 310
Helix 17	17	A	286	295	Right-handed alpha
Helix 18	18	A	296	299	Right-handed 310
Helix 19	19	A	300	304	Right-handed 310
Helix 20	20	A	321	336	Right-handed alpha
Helix 21	21	A	339	358	Right-handed alpha
Helix 22	22	A	364	369	Right-handed alpha
Helix 23	23	A	373	377	Right-handed 310
Helix 24	24	A	379	395	Right-handed alpha
Helix 25	25	A	399	411	Right-handed alpha
Helix 26	26	A	419	426	Right-handed alpha
Helix 27	27	A	427	430	Right-handed 310
Helix 28	28	A	455	462	Right-handed alpha
Helix 29	29	B	49	55	Right-handed alpha
Helix 30	30	B	61	65	Right-handed 310
Helix 31	31	B	130	133	Right-handed 310
Helix 32	32	B	134	136	Right-handed 310
Helix 33	33	B	154	159	Right-handed 310
Helix 34	34	B	245	249	Right-handed 310
Helix 35	35	B	329	336	Right-handed alpha
Helix 36	36	B	343	347	Right-handed 310
Helix 37	37	B	351	355	Right-handed 310
Helix 38	38	B	355	359	Right-handed 310
Helix 39	39	B	367	375	Right-handed alpha
Helix 40	40	B	419	425	Right-handed alpha
Helix 41	41	B	431	438	Right-handed 310
Helix 42	42	B	553	556	Right-handed 310
Helix 43	43	B	682	686	Right-handed 310
Helix 44	44	B	735	739	Right-handed 310
Helix 45	45	B	832	840	Right-handed alpha
Helix 46	46	B	844	848	Right-handed 310
Helix 47	47	B	879	890	Right-handed alpha
Helix 48	48	B	891	897	Right-handed 310
Helix 49	49	B	959	963	Right-handed 310
Helix 50	50	C	13	17	Right-handed 310
Helix 51	51	C	18	23	Right-handed alpha
Helix 52	52	C	23	35	Right-handed alpha
Helix 53	53	C	36	46	Right-handed alpha
Helix 54	54	C	58	63	Right-handed alpha
Helix 55	55	C	73	83	Right-handed alpha
Helix 56	56	C	83	95	Right-handed alpha
Helix 57	57	C	97	120	Right-handed alpha
Helix 58	58	C	129	134	Right-handed 310
Helix 59	59	C	140	158	Right-handed alpha
Helix 60	60	C	174	196	Right-handed alpha
Helix 61	61	C	199	214	Right-handed alpha
Helix 62	62	C	234	242	Right-handed alpha
Helix 63	63	C	251	261	Right-handed alpha
Helix 64	64	C	263	268	Right-handed 310
Helix 65	65	C	286	295	Right-handed alpha
Helix 66	66	C	296	299	Right-handed 310
Helix 67	67	C	300	304	Right-handed 310
Helix 68	68	C	321	336	Right-handed alpha
Helix 69	69	C	340	358	Right-handed alpha
Helix 70	70	C	364	369	Right-handed alpha
Helix 71	71	C	379	395	Right-handed alpha
Helix 72	72	C	399	411	Right-handed alpha
Helix 73	73	C	419	426	Right-handed alpha
Helix 74	74	C	455	462	Right-handed alpha
Helix 75	75	D	49	54	Right-handed alpha
Helix 76	76	D	61	65	Right-handed 310
Helix 77	77	D	130	133	Right-handed 310
Helix 78	78	D	154	159	Right-handed 310
Helix 79	79	D	245	249	Right-handed 310
Helix 80	80	D	329	336	Right-handed alpha
Helix 81	81	D	342	346	Right-handed 310
Helix 82	82	D	351	355	Right-handed 310
Helix 83	83	D	367	375	Right-handed alpha
Helix 84	84	D	419	425	Right-handed alpha
Helix 85	85	D	431	438	Right-handed 310
Helix 86	86	D	553	556	Right-handed 310
Helix 87	87	D	682	686	Right-handed 310
Helix 88	88	D	735	739	Right-handed 310
Helix 89	89	D	832	840	Right-handed alpha
Helix 90	90	D	844	852	Right-handed 310
Helix 91	91	D	879	881	Right-handed 310
Helix 92	92	D	882	889	Right-handed alpha
Helix 93	93	D	890	897	Right-handed 310
Helix 94	94	D	917	922	Right-handed 310
Helix 95	95	D	960	963	Right-handed 310
Helix 96	96	E	12	16	Right-handed 310
Helix 97	97	E	143	147	Right-handed 310
Helix 98	98	F	12	16	Right-handed 310
Helix 99	99	F	143	147	Right-handed 310
Helix 100	100	G	48	51	Right-handed 310
Helix 101	101	G	148	152	Right-handed 310

There are 38 sheets in PDB entry 5FQ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, CA, CB, CC, A, DB, C, DD, DE, DF, G, DH, DI, DJ, DK, DL, EA, EB, FA, FB, GA, GB, GC, GD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	248	250	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	138	139	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	317	320	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	161	166	anti-parallel
Strand 4	B	101	103	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	84	88	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	125	128	anti-parallel

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There are 23 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	188	first strand
Strand 2	B	252	264	anti-parallel
Strand 3	B	268	280	anti-parallel
Strand 4	B	289	303	anti-parallel
Strand 5	B	306	320	anti-parallel
Strand 6	B	376	394	anti-parallel
Strand 7	B	398	417	anti-parallel
Strand 8	B	446	469	anti-parallel
Strand 9	B	472	495	anti-parallel
Strand 10	B	513	534	anti-parallel
Strand 11	B	538	549	anti-parallel
Strand 12	B	558	569	anti-parallel
Strand 13	B	582	596	anti-parallel
Strand 14	B	643	656	anti-parallel
Strand 15	B	661	673	anti-parallel
Strand 16	B	697	712	anti-parallel
Strand 17	B	716	731	anti-parallel
Strand 18	B	802	812	anti-parallel
Strand 19	B	815	825	anti-parallel
Strand 20	B	904	915	anti-parallel
Strand 21	B	928	941	anti-parallel
Strand 22	B	973	983	anti-parallel
Strand 23	B	177	188	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	205	206	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	229	first strand
Strand 2	B	232	237	anti-parallel
Strand 3	G	10	13	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	629	631	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	614	first strand
Strand 2	B	617	620	anti-parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	689	693	parallel
Strand 3	B	676	680	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	746	first strand
Strand 2	B	752	756	anti-parallel
Strand 3	B	761	766	anti-parallel
Strand 4	B	793	794	anti-parallel

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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	777	778	first strand
Strand 2	B	859	865	parallel
Strand 3	B	868	873	anti-parallel

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There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	899	901	first strand
Strand 2	B	828	831	anti-parallel
Strand 3	B	965	966	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	248	250	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	138	139	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	317	320	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	138	144	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	101	104	parallel
Strand 5	D	107	108	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	75	first strand
Strand 2	D	84	88	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	125	128	anti-parallel

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There are 23 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	189	first strand
Strand 2	D	252	264	anti-parallel
Strand 3	D	268	280	anti-parallel
Strand 4	D	289	303	anti-parallel
Strand 5	D	306	320	anti-parallel
Strand 6	D	376	394	anti-parallel
Strand 7	D	398	417	anti-parallel
Strand 8	D	446	469	anti-parallel
Strand 9	D	472	495	anti-parallel
Strand 10	D	513	534	anti-parallel
Strand 11	D	538	549	anti-parallel
Strand 12	D	558	569	anti-parallel
Strand 13	D	582	596	anti-parallel
Strand 14	D	643	656	anti-parallel
Strand 15	D	661	673	anti-parallel
Strand 16	D	697	712	anti-parallel
Strand 17	D	717	731	anti-parallel
Strand 18	D	800	811	anti-parallel
Strand 19	D	815	826	anti-parallel
Strand 20	D	904	915	anti-parallel
Strand 21	D	928	941	anti-parallel
Strand 22	D	972	983	anti-parallel
Strand 23	D	177	189	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	205	206	anti-parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	225	first strand
Strand 2	D	234	237	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	607	609	first strand
Strand 2	D	629	631	anti-parallel

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There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	614	first strand
Strand 2	D	617	620	anti-parallel

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There are 3 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	635	first strand
Strand 2	D	689	693	parallel
Strand 3	D	676	680	anti-parallel

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There are 4 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	741	746	first strand
Strand 2	D	752	756	anti-parallel
Strand 3	D	763	765	anti-parallel
Strand 4	D	794	797	anti-parallel

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There are 3 strands in DK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	899	901	first strand
Strand 2	D	828	831	anti-parallel
Strand 3	D	965	966	parallel

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There are 2 strands in DL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	860	862	first strand
Strand 2	D	871	873	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	17	27	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	87	first strand
Strand 2	E	94	108	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	32	first strand
Strand 2	F	17	27	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	94	108	parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	19	first strand
Strand 2	G	38	42	anti-parallel
Strand 3	G	45	46	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	27	first strand
Strand 2	G	78	87	parallel
Strand 3	G	63	72	anti-parallel
Strand 4	G	52	54	anti-parallel

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There are 10 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	116	first strand
Strand 2	G	106	110	anti-parallel
Strand 3	G	204	206	anti-parallel
Strand 4	G	193	200	anti-parallel
Strand 5	G	209	211	anti-parallel
Strand 6	G	98	102	anti-parallel
Strand 7	G	120	125	anti-parallel
Strand 8	G	130	133	anti-parallel
Strand 9	G	154	159	anti-parallel
Strand 10	G	165	171	anti-parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	116	first strand
Strand 2	G	106	110	anti-parallel
Strand 3	G	204	206	anti-parallel
Strand 4	G	193	200	anti-parallel
Strand 5	G	181	187	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FQ8