Analysis of interatomic Contacts of Structural Units in PDB entry:
5FQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FQB entry

There is 1 chain in PDB entry 5FQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36LYS 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5FQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 108Right-handed alpha
Helix 2
2
A
121 126Right-handed alpha
Helix 3
3
A
127 136Right-handed alpha
Helix 4
4
A
142 152Right-handed alpha
Helix 5
5
A
224 226Right-handed 310
Helix 6
6
A
241 256Right-handed alpha
Helix 7
7
A
283 293Right-handed alpha
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There are 2 sheets in PDB entry 5FQB. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
70 79anti-parallel
Strand 5
A
82 86anti-parallel
Strand 6
A
112 116parallel
Strand 7
A
138 140parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 185first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
205 207anti-parallel
Strand 4
A
219 223anti-parallel
Strand 5
A
261 264parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il