Analysis of interatomic Contacts of Structural Units in PDB entry:
5FQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FQF entry

There are 2 chains in PDB entry 5FQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5LEU 587
B
 THR 5MET 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5FQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
22 27Right-handed alpha
Helix 3
3
A
76 78Right-handed 310
Helix 4
4
A
169 173Right-handed 310
Helix 5
5
A
182 191Right-handed alpha
Helix 6
6
A
193 197Right-handed 310
Helix 7
7
A
199 217Right-handed alpha
Helix 8
8
A
256 269Right-handed alpha
Helix 9
9
A
288 292Right-handed 310
Helix 10
10
A
312 334Right-handed alpha
Helix 11
11
A
335 337Right-handed 310
Helix 12
12
A
347 360Right-handed alpha
Helix 13
13
A
385 389Right-handed 310
Helix 14
14
A
397 399Right-handed 310
Helix 15
15
A
404 416Right-handed alpha
Helix 16
16
A
439 451Right-handed alpha
Helix 17
17
A
500 523Right-handed alpha
Helix 18
18
A
523 535Right-handed alpha
Helix 19
19
A
554 586Right-handed alpha
Helix 20
20
B
19 21Right-handed 310
Helix 21
21
B
22 27Right-handed alpha
Helix 22
22
B
76 78Right-handed 310
Helix 23
23
B
169 173Right-handed 310
Helix 24
24
B
182 190Right-handed alpha
Helix 25
25
B
193 197Right-handed 310
Helix 26
26
B
199 204Right-handed alpha
Helix 27
27
B
206 216Right-handed alpha
Helix 28
28
B
256 269Right-handed alpha
Helix 29
29
B
288 292Right-handed 310
Helix 30
30
B
312 334Right-handed alpha
Helix 31
31
B
335 337Right-handed 310
Helix 32
32
B
347 361Right-handed alpha
Helix 33
33
B
385 389Right-handed 310
Helix 34
34
B
397 399Right-handed 310
Helix 35
35
B
404 417Right-handed alpha
Helix 36
36
B
439 451Right-handed alpha
Helix 37
37
B
500 523Right-handed alpha
Helix 38
38
B
523 536Right-handed alpha
Helix 39
39
B
554 584Right-handed alpha
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There are 13 sheets in PDB entry 5FQF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
43 52anti-parallel
Strand 3
A
121 129anti-parallel
Strand 4
A
80 91anti-parallel
Strand 5
A
101 108anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
154 166parallel
Strand 3
A
137 146anti-parallel
Strand 4
A
57 64anti-parallel
Strand 5
A
114 116anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
74 75anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
455 458parallel
Strand 3
A
419 423parallel
Strand 4
A
391 395parallel
Strand 5
A
370 374parallel
Strand 6
A
339 342parallel
Strand 7
A
280 284parallel
Strand 8
A
220 224parallel
Strand 9
A
176 179parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
293 297parallel
Strand 4
A
302 306anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
497 498anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
550 552anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
43 52anti-parallel
Strand 3
B
121 129anti-parallel
Strand 4
B
80 91anti-parallel
Strand 5
B
101 108anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 40first strand
Strand 2
B
154 166parallel
Strand 3
B
137 146anti-parallel
Strand 4
B
57 64anti-parallel
Strand 5
B
114 116anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
74 75anti-parallel
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There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
455 458parallel
Strand 3
B
419 423parallel
Strand 4
B
391 395parallel
Strand 5
B
370 374parallel
Strand 6
B
339 342parallel
Strand 7
B
280 284parallel
Strand 8
B
220 224parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
293 297parallel
Strand 4
B
302 306anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 544first strand
Strand 2
B
550 552anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il