Analysis of interatomic Contacts of Structural Units in PDB entry:
5FR0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FR0 entry

There is 1 chain in PDB entry 5FR0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6MET 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5FR0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
22 27Right-handed alpha
Helix 3
3
A
76 78Right-handed 310
Helix 4
4
A
169 173Right-handed 310
Helix 5
5
A
182 191Right-handed alpha
Helix 6
6
A
193 197Right-handed 310
Helix 7
7
A
199 217Right-handed alpha
Helix 8
8
A
256 269Right-handed alpha
Helix 9
9
A
312 334Right-handed alpha
Helix 10
10
A
335 337Right-handed 310
Helix 11
11
A
347 361Right-handed alpha
Helix 12
12
A
385 389Right-handed 310
Helix 13
13
A
397 399Right-handed 310
Helix 14
14
A
404 416Right-handed alpha
Helix 15
15
A
438 451Right-handed alpha
Helix 16
16
A
500 523Right-handed alpha
Helix 17
17
A
523 535Right-handed alpha
Helix 18
18
A
554 584Right-handed alpha
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There are 7 sheets in PDB entry 5FR0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
43 52anti-parallel
Strand 3
A
121 129anti-parallel
Strand 4
A
80 91anti-parallel
Strand 5
A
101 108anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
154 166parallel
Strand 3
A
137 146anti-parallel
Strand 4
A
57 64anti-parallel
Strand 5
A
114 116anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
74 75anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
455 458parallel
Strand 3
A
419 423parallel
Strand 4
A
391 395parallel
Strand 5
A
370 375parallel
Strand 6
A
339 344parallel
Strand 7
A
280 284parallel
Strand 8
A
220 224parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
293 297parallel
Strand 4
A
303 306anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
497 498anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
550 552anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il