Analysis of interatomic Contacts of Structural Units in PDB entry:
5FR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FR8 entry

There are 2 chains in PDB entry 5FR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 24	PHE 730
B	ILE 24	ASN 610

There are 29 helices in PDB entry 5FR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	32	Right-handed alpha
Helix 2	2	A	33	35	Right-handed 310
Helix 3	3	A	43	49	Right-handed alpha
Helix 4	4	A	55	60	Right-handed alpha
Helix 5	5	A	88	90	Right-handed 310
Helix 6	6	A	102	107	Right-handed 310
Helix 7	7	A	125	127	Right-handed 310
Helix 8	8	A	138	144	Right-handed 310
Helix 9	9	A	217	221	Right-handed 310
Helix 10	10	A	271	275	Right-handed 310
Helix 11	11	A	277	282	Right-handed alpha
Helix 12	12	A	326	329	Right-handed 310
Helix 13	13	A	392	398	Right-handed alpha
Helix 14	14	A	470	475	Right-handed alpha
Helix 15	15	A	661	666	Right-handed 310
Helix 16	16	B	27	33	Right-handed alpha
Helix 17	17	B	43	49	Right-handed alpha
Helix 18	18	B	55	60	Right-handed alpha
Helix 19	19	B	88	90	Right-handed 310
Helix 20	20	B	102	107	Right-handed 310
Helix 21	21	B	125	127	Right-handed 310
Helix 22	22	B	138	144	Right-handed 310
Helix 23	23	B	217	221	Right-handed 310
Helix 24	24	B	271	275	Right-handed 310
Helix 25	25	B	277	282	Right-handed alpha
Helix 26	26	B	326	329	Right-handed 310
Helix 27	27	B	392	398	Right-handed alpha
Helix 28	28	B	470	475	Right-handed alpha
Helix 29	29	B	661	666	Right-handed 310

There are 10 sheets in PDB entry 5FR8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	129	136	anti-parallel
Strand 3	A	150	156	anti-parallel
Strand 4	A	92	96	parallel
Strand 5	A	99	100	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	81	84	anti-parallel

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There are 23 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	174	first strand
Strand 2	A	182	194	anti-parallel
Strand 3	A	198	209	anti-parallel
Strand 4	A	229	244	anti-parallel
Strand 5	A	247	261	anti-parallel
Strand 6	A	287	302	anti-parallel
Strand 7	A	305	320	anti-parallel
Strand 8	A	340	358	anti-parallel
Strand 9	A	362	377	anti-parallel
Strand 10	A	404	419	anti-parallel
Strand 11	A	424	435	anti-parallel
Strand 12	A	439	451	anti-parallel
Strand 13	A	456	467	anti-parallel
Strand 14	A	506	518	anti-parallel
Strand 15	A	522	538	anti-parallel
Strand 16	A	570	588	anti-parallel
Strand 17	A	591	605	anti-parallel
Strand 18	A	618	627	anti-parallel
Strand 19	A	632	641	anti-parallel
Strand 20	A	675	684	anti-parallel
Strand 21	A	690	697	anti-parallel
Strand 22	A	721	728	anti-parallel
Strand 23	A	164	174	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	482	first strand
Strand 2	A	495	498	anti-parallel
Strand 3	A	561	568	parallel
Strand 4	A	545	550	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	645	first strand
Strand 2	A	671	672	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	129	136	anti-parallel
Strand 3	B	150	156	anti-parallel
Strand 4	B	92	96	parallel
Strand 5	B	99	100	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	81	84	anti-parallel

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There are 23 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	174	first strand
Strand 2	B	182	194	anti-parallel
Strand 3	B	198	209	anti-parallel
Strand 4	B	229	244	anti-parallel
Strand 5	B	247	261	anti-parallel
Strand 6	B	287	302	anti-parallel
Strand 7	B	305	320	anti-parallel
Strand 8	B	340	358	anti-parallel
Strand 9	B	362	377	anti-parallel
Strand 10	B	404	419	anti-parallel
Strand 11	B	424	435	anti-parallel
Strand 12	B	439	451	anti-parallel
Strand 13	B	456	467	anti-parallel
Strand 14	B	506	518	anti-parallel
Strand 15	B	522	538	anti-parallel
Strand 16	B	570	588	anti-parallel
Strand 17	B	591	605	anti-parallel
Strand 18	B	618	627	anti-parallel
Strand 19	B	632	641	anti-parallel
Strand 20	B	675	684	anti-parallel
Strand 21	B	690	697	anti-parallel
Strand 22	B	721	729	anti-parallel
Strand 23	B	164	174	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	482	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	561	568	parallel
Strand 4	B	545	550	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	644	645	first strand
Strand 2	B	671	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FR8