Analysis of interatomic Contacts of Structural Units in PDB entry:
5FRQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FRQ entry

There are 4 chains in PDB entry 5FRQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 373
B	MET 1	LEU 374
C	MET 1	THR 373
D	MET 1	LYS 185

There are 49 helices in PDB entry 5FRQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	18	Right-handed alpha
Helix 2	2	A	19	21	Right-handed 310
Helix 3	3	A	28	30	Right-handed 310
Helix 4	4	A	72	81	Right-handed alpha
Helix 5	5	A	111	115	Right-handed 310
Helix 6	6	A	132	142	Right-handed alpha
Helix 7	7	A	143	145	Right-handed 310
Helix 8	8	A	151	154	Right-handed 310
Helix 9	9	A	164	166	Right-handed 310
Helix 10	10	A	201	211	Right-handed alpha
Helix 11	11	A	244	249	Right-handed alpha
Helix 12	12	A	261	273	Right-handed alpha
Helix 13	13	A	322	331	Right-handed alpha
Helix 14	14	B	7	18	Right-handed alpha
Helix 15	15	B	19	21	Right-handed 310
Helix 16	16	B	28	30	Right-handed 310
Helix 17	17	B	72	82	Right-handed alpha
Helix 18	18	B	111	115	Right-handed 310
Helix 19	19	B	132	142	Right-handed alpha
Helix 20	20	B	143	145	Right-handed 310
Helix 21	21	B	151	154	Right-handed 310
Helix 22	22	B	201	211	Right-handed alpha
Helix 23	23	B	244	248	Right-handed 310
Helix 24	24	B	261	273	Right-handed alpha
Helix 25	25	B	322	331	Right-handed alpha
Helix 26	26	C	7	18	Right-handed alpha
Helix 27	27	C	19	21	Right-handed 310
Helix 28	28	C	28	30	Right-handed 310
Helix 29	29	C	72	82	Right-handed alpha
Helix 30	30	C	111	115	Right-handed 310
Helix 31	31	C	132	142	Right-handed alpha
Helix 32	32	C	143	145	Right-handed 310
Helix 33	33	C	151	154	Right-handed 310
Helix 34	34	C	201	211	Right-handed alpha
Helix 35	35	C	244	248	Right-handed 310
Helix 36	36	C	261	273	Right-handed alpha
Helix 37	37	C	322	331	Right-handed alpha
Helix 38	38	D	8	18	Right-handed alpha
Helix 39	39	D	19	21	Right-handed 310
Helix 40	40	D	28	30	Right-handed 310
Helix 41	41	D	72	81	Right-handed alpha
Helix 42	42	D	132	142	Right-handed alpha
Helix 43	43	D	143	145	Right-handed 310
Helix 44	44	D	151	154	Right-handed 310
Helix 45	45	D	164	166	Right-handed 310
Helix 46	46	D	201	211	Right-handed alpha
Helix 47	47	D	244	249	Right-handed alpha
Helix 48	48	D	261	273	Right-handed alpha
Helix 49	49	D	322	331	Right-handed alpha

There are 12 sheets in PDB entry 5FRQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, A, DB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	95	100	anti-parallel
Strand 5	A	103	108	anti-parallel
Strand 6	D	299	305	anti-parallel
Strand 7	D	286	290	anti-parallel
Strand 8	D	277	282	anti-parallel
Strand 9	D	316	321	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	232	236	anti-parallel
Strand 6	A	223	227	anti-parallel
Strand 7	A	215	219	anti-parallel
Strand 8	A	125	129	anti-parallel
Strand 9	A	189	190	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	200	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	167	173	anti-parallel
Strand 4	A	177	183	anti-parallel
Strand 5	A	366	369	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	336	341	anti-parallel
Strand 8	A	255	260	anti-parallel

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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	321	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	286	291	anti-parallel
Strand 4	A	299	305	anti-parallel
Strand 5	D	103	108	anti-parallel
Strand 6	D	95	100	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	3	6	anti-parallel
Strand 9	D	61	64	anti-parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	64	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	86	92	anti-parallel
Strand 4	B	95	100	anti-parallel
Strand 5	B	103	108	anti-parallel
Strand 6	C	299	305	anti-parallel
Strand 7	C	286	291	anti-parallel
Strand 8	C	277	282	anti-parallel
Strand 9	C	316	321	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	232	236	anti-parallel
Strand 6	B	223	227	anti-parallel
Strand 7	B	215	219	anti-parallel
Strand 8	B	125	129	anti-parallel
Strand 9	B	189	190	anti-parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	167	173	anti-parallel
Strand 4	B	177	183	anti-parallel
Strand 5	B	366	369	anti-parallel
Strand 6	B	348	352	anti-parallel
Strand 7	B	336	340	anti-parallel
Strand 8	B	256	260	anti-parallel

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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	321	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	286	291	anti-parallel
Strand 4	B	299	305	anti-parallel
Strand 5	C	103	108	anti-parallel
Strand 6	C	95	100	anti-parallel
Strand 7	C	86	92	anti-parallel
Strand 8	C	2	6	anti-parallel
Strand 9	C	61	64	anti-parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	232	236	anti-parallel
Strand 6	C	223	227	anti-parallel
Strand 7	C	215	219	anti-parallel
Strand 8	C	125	129	anti-parallel
Strand 9	C	189	190	anti-parallel

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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	200	first strand
Strand 2	C	156	162	anti-parallel
Strand 3	C	167	173	anti-parallel
Strand 4	C	177	183	anti-parallel
Strand 5	C	366	369	anti-parallel
Strand 6	C	348	352	anti-parallel
Strand 7	C	336	341	anti-parallel
Strand 8	C	255	260	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	41	47	anti-parallel
Strand 4	D	51	58	anti-parallel
Strand 5	D	232	236	anti-parallel
Strand 6	D	223	227	anti-parallel
Strand 7	D	215	219	anti-parallel
Strand 8	D	125	129	anti-parallel
Strand 9	D	189	190	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	200	first strand
Strand 2	D	156	162	anti-parallel
Strand 3	D	167	173	anti-parallel
Strand 4	D	177	183	anti-parallel
Strand 5	D	366	369	anti-parallel
Strand 6	D	348	352	anti-parallel
Strand 7	D	336	341	anti-parallel
Strand 8	D	255	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FRQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FRQ