Analysis of interatomic Contacts of Structural Units in PDB entry:
5FSA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FSA entry

There are 2 chains in PDB entry 5FSA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 45PHE 528
B
 LYS 46PHE 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5FSA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 67Right-handed alpha
Helix 2
2
A
67 80Right-handed alpha
Helix 3
3
A
96 106Right-handed alpha
Helix 4
4
A
114 127Right-handed alpha
Helix 5
5
A
135 148Right-handed alpha
Helix 6
6
A
151 173Right-handed alpha
Helix 7
7
A
187 205Right-handed alpha
Helix 8
8
A
206 213Right-handed alpha
Helix 9
9
A
216 228Right-handed alpha
Helix 10
10
A
229 234Right-handed 310
Helix 11
11
A
240 267Right-handed alpha
Helix 12
12
A
275 283Right-handed alpha
Helix 13
13
A
293 326Right-handed alpha
Helix 14
14
A
326 342Right-handed alpha
Helix 15
15
A
352 358Right-handed alpha
Helix 16
16
A
359 373Right-handed alpha
Helix 17
17
A
405 412Right-handed alpha
Helix 18
18
A
423 427Right-handed 310
Helix 19
19
A
472 490Right-handed alpha
Helix 20
20
B
60 67Right-handed alpha
Helix 21
21
B
67 80Right-handed alpha
Helix 22
22
B
96 106Right-handed alpha
Helix 23
23
B
114 127Right-handed alpha
Helix 24
24
B
135 148Right-handed alpha
Helix 25
25
B
151 173Right-handed alpha
Helix 26
26
B
187 206Right-handed alpha
Helix 27
27
B
206 213Right-handed alpha
Helix 28
28
B
215 217Right-handed 310
Helix 29
29
B
218 228Right-handed alpha
Helix 30
30
B
229 234Right-handed 310
Helix 31
31
B
241 267Right-handed alpha
Helix 32
32
B
275 283Right-handed alpha
Helix 33
33
B
293 326Right-handed alpha
Helix 34
34
B
326 341Right-handed alpha
Helix 35
35
B
345 350Right-handed 310
Helix 36
36
B
352 358Right-handed alpha
Helix 37
37
B
359 373Right-handed alpha
Helix 38
38
B
405 412Right-handed alpha
Helix 39
39
B
423 428Right-handed 310
Helix 40
40
B
465 469Right-handed 310
Helix 41
41
B
472 491Right-handed alpha
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There are 9 sheets in PDB entry 5FSA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
401 404parallel
Strand 4
A
379 383anti-parallel
Strand 5
A
112 113anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
518 522anti-parallel
Strand 3
A
491 494anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
394 396anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
451 453anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
511 512anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 87first strand
Strand 2
B
90 95anti-parallel
Strand 3
B
401 404parallel
Strand 4
B
379 383anti-parallel
Strand 5
B
112 113anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
395 396anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 446first strand
Strand 2
B
451 453anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 504first strand
Strand 2
B
511 512anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il