Analysis of interatomic Contacts of Structural Units in PDB entry:
5FT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FT1 entry

There are 12 chains in PDB entry 5FT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	VAL 266
B	PHE 4	ARG 258
C	ARG 761	ASN 770
D	ARG 761	ASN 770
E	PHE 4	GLN 259
F	ARG 761	SER 769
G	GLN 3	VAL 257
H	ARG 761	SER 769
I	GLN 3	GLN 259
J	ARG 761	ASN 770
K	GLN 3	ASP 260
L	GLY 764	SER 769

There are 53 helices in PDB entry 5FT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	16	Right-handed alpha
Helix 2	2	A	38	42	Right-handed 310
Helix 3	3	A	69	83	Right-handed alpha
Helix 4	4	A	86	99	Right-handed alpha
Helix 5	5	A	135	140	Right-handed alpha
Helix 6	6	A	140	145	Right-handed alpha
Helix 7	7	A	160	165	Right-handed alpha
Helix 8	8	A	166	187	Right-handed alpha
Helix 9	9	A	242	247	Right-handed 310
Helix 10	10	A	247	252	Right-handed 310
Helix 11	11	B	7	16	Right-handed alpha
Helix 12	12	B	68	83	Right-handed alpha
Helix 13	13	B	86	99	Right-handed alpha
Helix 14	14	B	135	139	Right-handed 310
Helix 15	15	B	140	147	Right-handed alpha
Helix 16	16	B	157	165	Right-handed alpha
Helix 17	17	B	169	187	Right-handed alpha
Helix 18	18	B	241	246	Right-handed alpha
Helix 19	19	B	247	252	Right-handed 310
Helix 20	20	E	7	16	Right-handed alpha
Helix 21	21	E	66	82	Right-handed alpha
Helix 22	22	E	83	85	Right-handed 310
Helix 23	23	E	86	99	Right-handed alpha
Helix 24	24	E	135	147	Right-handed alpha
Helix 25	25	E	157	165	Right-handed alpha
Helix 26	26	E	169	187	Right-handed alpha
Helix 27	27	E	241	246	Right-handed alpha
Helix 28	28	G	7	16	Right-handed alpha
Helix 29	29	G	68	83	Right-handed alpha
Helix 30	30	G	86	99	Right-handed alpha
Helix 31	31	G	135	138	Right-handed 310
Helix 32	32	G	139	147	Right-handed alpha
Helix 33	33	G	157	165	Right-handed alpha
Helix 34	34	G	171	187	Right-handed alpha
Helix 35	35	G	241	246	Right-handed alpha
Helix 36	36	G	247	253	Right-handed 310
Helix 37	37	I	7	16	Right-handed alpha
Helix 38	38	I	68	82	Right-handed alpha
Helix 39	39	I	83	85	Right-handed 310
Helix 40	40	I	86	99	Right-handed alpha
Helix 41	41	I	135	138	Right-handed 310
Helix 42	42	I	139	147	Right-handed alpha
Helix 43	43	I	157	165	Right-handed alpha
Helix 44	44	I	166	187	Right-handed alpha
Helix 45	45	I	241	246	Right-handed alpha
Helix 46	46	I	248	252	Right-handed 310
Helix 47	47	K	7	16	Right-handed alpha
Helix 48	48	K	68	83	Right-handed alpha
Helix 49	49	K	86	99	Right-handed alpha
Helix 50	50	K	139	147	Right-handed alpha
Helix 51	51	K	160	165	Right-handed alpha
Helix 52	52	K	171	187	Right-handed alpha
Helix 53	53	K	247	251	Right-handed 310

There are 14 sheets in PDB entry 5FT1. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, BD, EA, EB, GA, GB, IA, IB, KA, KB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	53	59	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	109	112	anti-parallel
Strand 3	A	128	132	anti-parallel
Strand 4	A	223	232	anti-parallel
Strand 5	A	206	215	anti-parallel
Strand 6	A	197	202	anti-parallel
Strand 7	A	149	151	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	30	32	anti-parallel
Strand 3	B	46	48	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	42	44	anti-parallel

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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	109	111	anti-parallel
Strand 3	B	126	132	anti-parallel
Strand 4	B	223	232	anti-parallel
Strand 5	B	206	215	anti-parallel
Strand 6	B	197	202	anti-parallel
Strand 7	B	149	151	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	G	122	124	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	46	47	anti-parallel
Strand 3	E	55	56	anti-parallel

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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	E	128	132	anti-parallel
Strand 3	E	223	230	anti-parallel
Strand 4	E	207	215	anti-parallel
Strand 5	E	197	202	anti-parallel
Strand 6	E	149	151	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	30	33	anti-parallel
Strand 3	G	45	48	anti-parallel
Strand 4	G	55	57	anti-parallel

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There are 7 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	105	first strand
Strand 2	G	109	111	anti-parallel
Strand 3	G	126	132	anti-parallel
Strand 4	G	223	232	anti-parallel
Strand 5	G	206	215	anti-parallel
Strand 6	G	197	202	anti-parallel
Strand 7	G	149	151	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	30	34	anti-parallel
Strand 3	I	44	49	anti-parallel
Strand 4	I	56	58	anti-parallel

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There are 7 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	105	first strand
Strand 2	I	109	112	anti-parallel
Strand 3	I	125	132	anti-parallel
Strand 4	I	223	232	anti-parallel
Strand 5	I	206	215	anti-parallel
Strand 6	I	197	202	anti-parallel
Strand 7	I	149	151	anti-parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	30	33	anti-parallel
Strand 3	K	44	48	anti-parallel
Strand 4	K	57	58	anti-parallel

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There are 7 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	104	105	first strand
Strand 2	K	109	112	anti-parallel
Strand 3	K	125	132	anti-parallel
Strand 4	K	223	232	anti-parallel
Strand 5	K	206	215	anti-parallel
Strand 6	K	197	202	anti-parallel
Strand 7	K	149	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FT1