Analysis of interatomic Contacts of Structural Units in PDB entry:
5FTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FTF entry

There is 1 chain in PDB entry 5FTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5FTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
33 44Right-handed alpha
Helix 3
3
A
55 63Right-handed alpha
Helix 4
4
A
67 72Right-handed alpha
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
111 127Right-handed alpha
Helix 8
8
A
130 135Right-handed 310
Helix 9
9
A
151 160Right-handed alpha
Helix 10
10
A
166 170Right-handed 310
Helix 11
11
A
171 176Right-handed alpha
Helix 12
12
A
191 203Right-handed alpha
Helix 13
13
A
207 217Right-handed alpha
Helix 14
14
A
219 224Right-handed alpha
Helix 15
15
A
236 249Right-handed alpha
Helix 16
16
A
265 269Right-handed 310
Helix 17
17
A
382 390Right-handed alpha
Helix 18
18
A
404 408Right-handed 310
Helix 19
19
A
411 424Right-handed alpha
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There are 5 sheets in PDB entry 5FTF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
49 53parallel
Strand 3
A
101 104parallel
Strand 4
A
136 141parallel
Strand 5
A
24 28parallel
Strand 6
A
177 183parallel
Strand 7
A
427 429anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
231 234parallel
Strand 3
A
371 373parallel
Strand 4
A
397 399parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
274 277anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
339 349anti-parallel
Strand 3
A
325 334anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
310 314anti-parallel
Strand 3
A
299 305anti-parallel
Strand 4
A
282 285anti-parallel
Strand 5
A
352 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il