Analysis of interatomic Contacts of Structural Units in PDB entry:
5FTT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FTT entry

There are 5 chains in PDB entry 5FTT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 46	GLY 307
B	CYS 36	PRO 361
C	ARG 100	GLY 464
D	LEU 202	GLY 464
E	PRO 45	GLN 80

There are 28 helices in PDB entry 5FTT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	91	95	Right-handed 310
Helix 2	2	A	117	123	Right-handed alpha
Helix 3	3	B	82	87	Right-handed alpha
Helix 4	4	B	125	132	Right-handed alpha
Helix 5	5	B	154	158	Right-handed 310
Helix 6	6	B	196	201	Right-handed 310
Helix 7	7	B	225	229	Right-handed 310
Helix 8	8	B	268	272	Right-handed 310
Helix 9	9	B	318	327	Right-handed alpha
Helix 10	10	C	150	159	Right-handed alpha
Helix 11	11	C	255	262	Right-handed alpha
Helix 12	12	C	376	378	Right-handed 310
Helix 13	13	D	255	262	Right-handed alpha
Helix 14	14	D	376	378	Right-handed 310
Helix 15	15	E	91	95	Right-handed 310
Helix 16	16	E	117	123	Right-handed alpha
Helix 17	17	F	82	87	Right-handed alpha
Helix 18	18	F	125	132	Right-handed alpha
Helix 19	19	F	154	158	Right-handed 310
Helix 20	20	F	196	201	Right-handed 310
Helix 21	21	F	225	229	Right-handed 310
Helix 22	22	F	268	272	Right-handed 310
Helix 23	23	F	315	317	Right-handed 310
Helix 24	24	F	318	327	Right-handed alpha
Helix 25	25	G	150	159	Right-handed alpha
Helix 26	26	G	255	262	Right-handed alpha
Helix 27	27	G	376	378	Right-handed 310
Helix 28	28	H	255	262	Right-handed alpha

There are 49 sheets in PDB entry 5FTT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	74	76	anti-parallel
Strand 3	A	110	113	anti-parallel
Strand 4	A	96	98	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	151	152	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	131	137	anti-parallel
Strand 4	A	142	144	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	131	137	anti-parallel
Strand 4	A	148	149	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	183	184	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	243	247	parallel
Strand 3	A	225	232	anti-parallel
Strand 4	A	188	193	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	243	247	parallel
Strand 3	A	225	232	anti-parallel
Strand 4	A	237	239	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	213	216	anti-parallel
Strand 3	A	206	208	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	274	first strand
Strand 2	A	294	301	anti-parallel

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There are 14 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	46	48	anti-parallel
Strand 3	B	67	69	parallel
Strand 4	B	92	94	parallel
Strand 5	B	113	115	parallel
Strand 6	B	137	139	parallel
Strand 7	B	163	165	parallel
Strand 8	B	184	186	parallel
Strand 9	B	208	210	parallel
Strand 10	B	234	236	parallel
Strand 11	B	256	258	parallel
Strand 12	B	280	282	parallel
Strand 13	B	304	306	parallel
Strand 14	B	333	335	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	339	341	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	184	192	anti-parallel
Strand 3	C	118	127	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	164	168	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	218	first strand
Strand 2	C	451	459	anti-parallel
Strand 3	C	443	448	anti-parallel
Strand 4	C	432	438	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	249	253	anti-parallel
Strand 4	C	266	269	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	295	300	anti-parallel
Strand 4	C	305	311	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	335	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	C	352	358	anti-parallel
Strand 4	C	365	374	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	384	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	C	406	412	anti-parallel
Strand 4	C	418	424	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	218	first strand
Strand 2	D	451	460	anti-parallel
Strand 3	D	443	448	anti-parallel
Strand 4	D	432	438	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	227	first strand
Strand 2	D	237	241	anti-parallel
Strand 3	D	249	253	anti-parallel
Strand 4	D	266	269	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	285	289	anti-parallel
Strand 3	D	297	300	anti-parallel
Strand 4	D	305	309	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	335	first strand
Strand 2	D	340	345	anti-parallel
Strand 3	D	352	358	anti-parallel
Strand 4	D	365	374	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	384	first strand
Strand 2	D	387	392	anti-parallel
Strand 3	D	406	412	anti-parallel
Strand 4	D	418	419	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	384	first strand
Strand 2	D	387	392	anti-parallel
Strand 3	D	406	412	anti-parallel
Strand 4	D	423	424	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	71	76	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	96	101	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	63	first strand
Strand 2	E	151	152	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	89	first strand
Strand 2	E	80	85	anti-parallel
Strand 3	E	131	137	anti-parallel
Strand 4	E	142	144	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	89	first strand
Strand 2	E	80	85	anti-parallel
Strand 3	E	131	137	anti-parallel
Strand 4	E	148	149	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	155	first strand
Strand 2	E	183	184	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	169	first strand
Strand 2	E	243	248	parallel
Strand 3	E	225	232	anti-parallel
Strand 4	E	188	193	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	169	first strand
Strand 2	E	243	248	parallel
Strand 3	E	225	232	anti-parallel
Strand 4	E	237	239	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	177	first strand
Strand 2	E	213	216	anti-parallel
Strand 3	E	206	208	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	274	first strand
Strand 2	E	294	301	anti-parallel

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There are 14 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	46	48	anti-parallel
Strand 3	F	67	69	parallel
Strand 4	F	92	94	parallel
Strand 5	F	113	115	parallel
Strand 6	F	137	139	parallel
Strand 7	F	163	165	parallel
Strand 8	F	184	186	parallel
Strand 9	F	208	210	parallel
Strand 10	F	234	236	parallel
Strand 11	F	256	258	parallel
Strand 12	F	280	282	parallel
Strand 13	F	304	306	parallel
Strand 14	F	333	335	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	313	first strand
Strand 2	F	339	341	parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	104	first strand
Strand 2	G	184	192	anti-parallel
Strand 3	G	118	127	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	112	first strand
Strand 2	G	164	167	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	218	first strand
Strand 2	G	451	460	anti-parallel
Strand 3	G	443	448	anti-parallel
Strand 4	G	432	438	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	224	228	first strand
Strand 2	G	237	241	anti-parallel
Strand 3	G	249	253	anti-parallel
Strand 4	G	266	269	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	281	first strand
Strand 2	G	285	290	anti-parallel
Strand 3	G	295	300	anti-parallel
Strand 4	G	305	311	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	335	first strand
Strand 2	G	340	345	anti-parallel
Strand 3	G	352	358	anti-parallel
Strand 4	G	365	374	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	380	384	first strand
Strand 2	G	387	392	anti-parallel
Strand 3	G	406	412	anti-parallel
Strand 4	G	418	419	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	380	384	first strand
Strand 2	G	387	392	anti-parallel
Strand 3	G	406	412	anti-parallel
Strand 4	G	423	424	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	206	218	first strand
Strand 2	H	451	460	anti-parallel
Strand 3	H	443	448	anti-parallel
Strand 4	H	432	438	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	224	227	first strand
Strand 2	H	237	241	anti-parallel
Strand 3	H	249	253	anti-parallel
Strand 4	H	266	269	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	280	281	first strand
Strand 2	H	285	289	anti-parallel
Strand 3	H	295	300	anti-parallel
Strand 4	H	305	311	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	332	335	first strand
Strand 2	H	340	345	anti-parallel
Strand 3	H	352	358	anti-parallel
Strand 4	H	365	374	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	380	384	first strand
Strand 2	H	387	392	anti-parallel
Strand 3	H	406	412	anti-parallel
Strand 4	H	418	419	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	380	384	first strand
Strand 2	H	387	392	anti-parallel
Strand 3	H	406	412	anti-parallel
Strand 4	H	423	424	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FTT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FTT