Analysis of interatomic Contacts of Structural Units in PDB entry:
5FTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FTY entry

There are 2 chains in PDB entry 5FTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 650	ALA 881
B	VAL 644	PRO 879

There are 9 helices in PDB entry 5FTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	694	697	Right-handed 310
Helix 2	2	A	775	779	Right-handed 310
Helix 3	3	A	782	789	Right-handed alpha
Helix 4	4	A	810	818	Right-handed alpha
Helix 5	5	A	836	840	Right-handed 310
Helix 6	6	B	775	779	Right-handed 310
Helix 7	7	B	782	789	Right-handed alpha
Helix 8	8	B	810	819	Right-handed alpha
Helix 9	9	B	836	840	Right-handed 310

There are 16 sheets in PDB entry 5FTY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	657	first strand
Strand 2	A	676	683	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	692	first strand
Strand 2	A	676	683	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	724	728	anti-parallel
Strand 3	A	676	683	anti-parallel
Strand 4	A	689	692	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	724	728	anti-parallel
Strand 3	A	676	683	anti-parallel
Strand 4	A	652	657	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	664	first strand
Strand 2	A	746	756	parallel
Strand 3	A	735	743	anti-parallel
Strand 4	A	698	700	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	718	first strand
Strand 2	A	721	722	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	767	first strand
Strand 2	A	790	793	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	773	first strand
Strand 2	A	872	878	parallel
Strand 3	A	855	863	anti-parallel
Strand 4	A	820	825	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	657	first strand
Strand 2	B	675	684	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	692	first strand
Strand 2	B	675	684	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	718	first strand
Strand 2	B	721	728	anti-parallel
Strand 3	B	675	684	anti-parallel
Strand 4	B	689	692	parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	718	first strand
Strand 2	B	721	728	anti-parallel
Strand 3	B	675	684	anti-parallel
Strand 4	B	650	657	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	664	first strand
Strand 2	B	746	756	parallel
Strand 3	B	735	743	anti-parallel
Strand 4	B	698	700	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	767	first strand
Strand 2	B	790	793	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	773	first strand
Strand 2	B	872	878	parallel
Strand 3	B	855	863	anti-parallel
Strand 4	B	820	825	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	841	842	first strand
Strand 2	B	846	847	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FTY