Analysis of interatomic Contacts of Structural Units in PDB entry:
5FUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FUB entry

There is 1 chain in PDB entry 5FUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 72ARG 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5FUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 84Right-handed alpha
Helix 2
2
A
86 96Right-handed alpha
Helix 3
3
A
96 110Right-handed alpha
Helix 4
4
A
111 115Right-handed 310
Helix 5
5
A
127 137Right-handed alpha
Helix 6
6
A
149 161Right-handed alpha
Helix 7
7
A
173 177Right-handed 310
Helix 8
8
A
199 211Right-handed alpha
Helix 9
9
A
232 240Right-handed alpha
Helix 10
10
A
241 245Right-handed 310
Helix 11
11
A
245 249Right-handed 310
Helix 12
12
A
251 253Right-handed 310
Helix 13
13
A
254 264Right-handed alpha
Helix 14
14
A
273 276Right-handed 310
Helix 15
15
A
293 297Right-handed 310
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There are 5 sheets in PDB entry 5FUB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
141 145parallel
Strand 3
A
118 122parallel
Strand 4
A
183 188parallel
Strand 5
A
212 219parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
350 361anti-parallel
Strand 3
A
312 325anti-parallel
Strand 4
A
335 338anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
350 361anti-parallel
Strand 3
A
312 325anti-parallel
Strand 4
A
222 230anti-parallel
Strand 5
A
282 288anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
312 325anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 307first strand
Strand 2
A
366 375anti-parallel
Strand 3
A
383 391anti-parallel
Strand 4
A
400 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il