Analysis of interatomic Contacts of Structural Units in PDB entry:
5FUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FUV entry

There are 2 chains in PDB entry 5FUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 204MET 384
B
 HIS 204ASN 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5FUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
217 232Right-handed alpha
Helix 2
2
A
256 261Right-handed 310
Helix 3
3
A
268 273Right-handed 310
Helix 4
4
A
274 279Right-handed 310
Helix 5
5
A
286 290Right-handed 310
Helix 6
6
A
292 303Right-handed alpha
Helix 7
7
A
321 331Right-handed alpha
Helix 8
8
A
374 383Right-handed alpha
Helix 9
9
B
217 232Right-handed alpha
Helix 10
10
B
269 273Right-handed 310
Helix 11
11
B
274 279Right-handed 310
Helix 12
12
B
286 290Right-handed 310
Helix 13
13
B
292 303Right-handed alpha
Helix 14
14
B
321 331Right-handed alpha
Helix 15
15
B
374 382Right-handed alpha
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There are 6 sheets in PDB entry 5FUV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 266first strand
Strand 2
A
236 241parallel
Strand 3
A
281 284parallel
Strand 4
A
306 310parallel
Strand 5
A
206 211parallel
Strand 6
A
333 336parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
348 349anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
370 373anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 266first strand
Strand 2
B
236 241parallel
Strand 3
B
281 284parallel
Strand 4
B
306 310parallel
Strand 5
B
206 211parallel
Strand 6
B
333 336parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
348 349anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 354first strand
Strand 2
B
370 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il