Analysis of interatomic Contacts of Structural Units in PDB entry:
5FV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FV2 entry

There are 6 chains in PDB entry 5FV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 116
B
 GLU 1SER 115
C
 GLU 1SER 116
V
 GLU 13LYS 108
W
 HIS 12LYS 108
X
 HIS 12LYS 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5FV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 91Right-handed 310
Helix 2
2
B
28 32Right-handed 310
Helix 3
3
B
87 91Right-handed 310
Helix 4
4
C
87 91Right-handed 310
Helix 5
5
V
16 24Right-handed alpha
Helix 6
6
V
35 39Right-handed alpha
Helix 7
7
W
16 25Right-handed alpha
Helix 8
8
W
35 39Right-handed alpha
Helix 9
9
X
16 25Right-handed alpha
Helix 10
10
X
35 39Right-handed alpha
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There are 14 sheets in PDB entry 5FV2. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, VA, VB, VC, WA, WB, WC, XA, XB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
69 73anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
109 114parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
69 73anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
109 114parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
69 73anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
110 114parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 2 strands in VA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
27 34first strand
Strand 2
V
51 58anti-parallel
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There are 2 strands in VB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
46 48first strand
Strand 2
V
66 83anti-parallel
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There are 2 strands in VC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
89 106first strand
Strand 2
V
66 83anti-parallel
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There are 2 strands in WA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
14 15first strand
Strand 2
V
66 83parallel
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There are 2 strands in WB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
27 34first strand
Strand 2
W
51 58anti-parallel
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There are 3 strands in WC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
46 48first strand
Strand 2
W
66 83anti-parallel
Strand 3
W
89 106anti-parallel
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There are 2 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
27 34first strand
Strand 2
X
51 58anti-parallel
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There are 3 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
46 48first strand
Strand 2
X
66 83anti-parallel
Strand 3
X
89 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il