Analysis of interatomic Contacts of Structural Units in PDB entry:
5FV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FV6 entry

There are 2 chains in PDB entry 5FV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 13CYS 192
A
 VAL 16CYS 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5FV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
29 33Right-handed 310
Helix 2
2
B
76 78Right-handed 310
Helix 3
3
B
187 189Right-handed 310
Helix 4
4
A
29 33Right-handed 310
Helix 5
5
A
76 78Right-handed 310
Helix 6
6
A
187 189Right-handed 310
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There are 6 sheets in PDB entry 5FV6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
182 185anti-parallel
Strand 3
B
130 133anti-parallel
Strand 4
B
113 124anti-parallel
Strand 5
B
63 72anti-parallel
Strand 6
B
49 60anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
80 86anti-parallel
Strand 4
B
136 142anti-parallel
Strand 5
B
160 165anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
174 175anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
49 60anti-parallel
Strand 3
A
63 72anti-parallel
Strand 4
A
113 124anti-parallel
Strand 5
A
130 133anti-parallel
Strand 6
A
182 185anti-parallel
Strand 7
A
34 35anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
160 165anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
174 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il