Analysis of interatomic Contacts of Structural Units in PDB entry:
5FVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FVD entry

There are 4 chains in PDB entry 5FVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 30LEU 383
B
 MET 1ARG 28
C
 GLY 30PHE 382
D
 MET 1LEU 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5FVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 39Right-handed 310
Helix 2
2
A
40 54Right-handed alpha
Helix 3
3
A
61 75Right-handed alpha
Helix 4
4
A
75 86Right-handed alpha
Helix 5
5
A
120 142Right-handed alpha
Helix 6
6
A
147 151Right-handed 310
Helix 7
7
A
156 174Right-handed alpha
Helix 8
8
A
179 191Right-handed alpha
Helix 9
9
A
191 198Right-handed alpha
Helix 10
10
A
202 217Right-handed alpha
Helix 11
11
A
218 235Right-handed alpha
Helix 12
12
A
238 249Right-handed alpha
Helix 13
13
A
249 268Right-handed alpha
Helix 14
14
A
270 274Right-handed 310
Helix 15
15
A
275 280Right-handed alpha
Helix 16
16
A
281 296Right-handed alpha
Helix 17
17
A
297 302Right-handed 310
Helix 18
18
A
309 314Right-handed alpha
Helix 19
19
A
318 333Right-handed alpha
Helix 20
20
A
344 361Right-handed alpha
Helix 21
21
A
365 369Right-handed 310
Helix 22
22
A
372 381Right-handed alpha
Helix 23
23
B
5 9Right-handed 310
Helix 24
24
B
13 27Right-handed alpha
Helix 25
25
C
37 39Right-handed 310
Helix 26
26
C
40 54Right-handed alpha
Helix 27
27
C
61 75Right-handed alpha
Helix 28
28
C
75 86Right-handed alpha
Helix 29
29
C
120 142Right-handed alpha
Helix 30
30
C
147 151Right-handed 310
Helix 31
31
C
156 174Right-handed alpha
Helix 32
32
C
179 191Right-handed alpha
Helix 33
33
C
191 198Right-handed alpha
Helix 34
34
C
202 217Right-handed alpha
Helix 35
35
C
218 235Right-handed alpha
Helix 36
36
C
238 249Right-handed alpha
Helix 37
37
C
249 256Right-handed alpha
Helix 38
38
C
256 268Right-handed alpha
Helix 39
39
C
270 274Right-handed 310
Helix 40
40
C
275 280Right-handed alpha
Helix 41
41
C
281 296Right-handed alpha
Helix 42
42
C
297 302Right-handed 310
Helix 43
43
C
309 314Right-handed alpha
Helix 44
44
C
318 333Right-handed alpha
Helix 45
45
C
344 361Right-handed alpha
Helix 46
46
C
365 369Right-handed 310
Helix 47
47
C
372 381Right-handed alpha
Helix 48
48
D
5 9Right-handed 310
Helix 49
49
D
13 27Right-handed alpha
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There are 4 sheets in PDB entry 5FVD. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
91 94parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
113 115anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
91 94parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 98first strand
Strand 2
C
113 115anti-parallel
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