Analysis of interatomic Contacts of Structural Units in PDB entry:
5FVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FVM entry

There are 4 chains in PDB entry 5FVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 64SER 2448
B
 ASN 64SER 2448
C
 VAL 3ASN 301
D
 VAL 3ASN 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are234 helices in PDB entry 5FVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 75Right-handed alpha
Helix 2
2
A
79 96Right-handed alpha
Helix 3
3
A
102 122Right-handed alpha
Helix 4
4
A
126 141Right-handed alpha
Helix 5
5
A
148 163Right-handed alpha
Helix 6
6
A
169 183Right-handed alpha
Helix 7
7
A
190 205Right-handed alpha
Helix 8
8
A
218 230Right-handed alpha
Helix 9
9
A
241 255Right-handed alpha
Helix 10
10
A
259 275Right-handed alpha
Helix 11
11
A
282 296Right-handed alpha
Helix 12
12
A
308 322Right-handed alpha
Helix 13
13
A
327 342Right-handed alpha
Helix 14
14
A
346 361Right-handed alpha
Helix 15
15
A
363 381Right-handed alpha
Helix 16
16
A
395 409Right-handed alpha
Helix 17
17
A
414 437Right-handed alpha
Helix 18
18
A
441 451Right-handed alpha
Helix 19
19
A
454 468Right-handed alpha
Helix 20
20
A
477 490Right-handed alpha
Helix 21
21
A
492 500Right-handed alpha
Helix 22
22
A
529 544Right-handed alpha
Helix 23
23
A
550 565Right-handed alpha
Helix 24
24
A
570 583Right-handed alpha
Helix 25
25
A
589 605Right-handed alpha
Helix 26
26
A
613 627Right-handed alpha
Helix 27
27
A
628 634Right-handed alpha
Helix 28
28
A
634 648Right-handed alpha
Helix 29
29
A
656 665Right-handed alpha
Helix 30
30
A
671 687Right-handed alpha
Helix 31
31
A
694 712Right-handed alpha
Helix 32
32
A
716 730Right-handed alpha
Helix 33
33
A
735 748Right-handed alpha
Helix 34
34
A
757 772Right-handed alpha
Helix 35
35
A
777 794Right-handed alpha
Helix 36
36
A
799 815Right-handed alpha
Helix 37
37
A
826 834Right-handed alpha
Helix 38
38
A
841 856Right-handed alpha
Helix 39
39
A
858 865Right-handed alpha
Helix 40
40
A
884 891Right-handed alpha
Helix 41
41
A
898 914Right-handed alpha
Helix 42
42
A
919 935Right-handed alpha
Helix 43
43
A
942 955Right-handed alpha
Helix 44
44
A
958 973Right-handed alpha
Helix 45
45
A
979 990Right-handed alpha
Helix 46
46
A
1003 1013Right-handed alpha
Helix 47
47
A
1018 1035Right-handed alpha
Helix 48
48
A
1041 1056Right-handed alpha
Helix 49
49
A
1061 1072Right-handed alpha
Helix 50
50
A
1079 1095Right-handed alpha
Helix 51
51
A
1098 1113Right-handed alpha
Helix 52
52
A
1118 1134Right-handed alpha
Helix 53
53
A
1137 1149Right-handed alpha
Helix 54
54
A
1159 1171Right-handed alpha
Helix 55
55
A
1176 1180Right-handed 310
Helix 56
56
A
1201 1214Right-handed alpha
Helix 57
57
A
1218 1231Right-handed alpha
Helix 58
58
A
1236 1242Right-handed alpha
Helix 59
59
A
1243 1245Right-handed 310
Helix 60
60
A
1248 1265Right-handed alpha
Helix 61
61
A
1275 1289Right-handed alpha
Helix 62
62
A
1299 1312Right-handed alpha
Helix 63
63
A
1318 1330Right-handed alpha
Helix 64
64
A
1333 1345Right-handed alpha
Helix 65
65
A
1347 1362Right-handed alpha
Helix 66
66
A
1363 1378Right-handed alpha
Helix 67
67
A
1382 1392Right-handed alpha
Helix 68
68
A
1395 1405Right-handed alpha
Helix 69
69
A
1412 1424Right-handed alpha
Helix 70
70
A
1428 1440Right-handed alpha
Helix 71
71
A
1444 1460Right-handed alpha
Helix 72
72
A
1462 1472Right-handed alpha
Helix 73
73
A
1477 1491Right-handed alpha
Helix 74
74
A
1494 1515Right-handed alpha
Helix 75
75
A
1523 1545Right-handed alpha
Helix 76
76
A
1551 1566Right-handed alpha
Helix 77
77
A
1569 1583Right-handed alpha
Helix 78
78
A
1590 1603Right-handed alpha
Helix 79
79
A
1604 1618Right-handed alpha
Helix 80
80
A
1632 1647Right-handed alpha
Helix 81
81
A
1648 1668Right-handed alpha
Helix 82
82
A
1687 1712Right-handed alpha
Helix 83
83
A
1719 1733Right-handed alpha
Helix 84
84
A
1739 1744Right-handed alpha
Helix 85
85
A
1744 1764Right-handed alpha
Helix 86
86
A
1783 1789Right-handed alpha
Helix 87
87
A
1794 1813Right-handed alpha
Helix 88
88
A
1815 1831Right-handed alpha
Helix 89
89
A
1833 1848Right-handed alpha
Helix 90
90
A
1849 1854Right-handed alpha
Helix 91
91
A
1855 1861Right-handed alpha
Helix 92
92
A
1868 1884Right-handed alpha
Helix 93
93
A
1890 1899Right-handed alpha
Helix 94
94
A
1902 1918Right-handed alpha
Helix 95
95
A
1919 1937Right-handed alpha
Helix 96
96
A
1939 1957Right-handed alpha
Helix 97
97
A
1961 1978Right-handed alpha
Helix 98
98
A
1988 2007Right-handed alpha
Helix 99
99
A
2010 2035Right-handed alpha
Helix 100
100
A
2044 2050Right-handed alpha
Helix 101
101
A
2056 2060Right-handed 310
Helix 102
102
A
2108 2129Right-handed alpha
Helix 103
103
A
2163 2173Right-handed alpha
Helix 104
104
A
2180 2189Right-handed alpha
Helix 105
105
A
2196 2211Right-handed alpha
Helix 106
106
A
2213 2224Right-handed alpha
Helix 107
107
A
2227 2252Right-handed alpha
Helix 108
108
A
2280 2285Right-handed alpha
Helix 109
109
A
2297 2305Right-handed alpha
Helix 110
110
A
2311 2326Right-handed alpha
Helix 111
111
A
2329 2340Right-handed alpha
Helix 112
112
A
2344 2354Right-handed alpha
Helix 113
113
A
2369 2373Right-handed 310
Helix 114
114
A
2377 2383Right-handed alpha
Helix 115
115
A
2386 2409Right-handed alpha
Helix 116
116
A
2420 2435Right-handed alpha
Helix 117
117
A
2436 2441Right-handed alpha
Helix 118
118
B
64 75Right-handed alpha
Helix 119
119
B
79 96Right-handed alpha
Helix 120
120
B
102 122Right-handed alpha
Helix 121
121
B
126 141Right-handed alpha
Helix 122
122
B
148 163Right-handed alpha
Helix 123
123
B
169 183Right-handed alpha
Helix 124
124
B
190 205Right-handed alpha
Helix 125
125
B
218 230Right-handed alpha
Helix 126
126
B
241 255Right-handed alpha
Helix 127
127
B
259 275Right-handed alpha
Helix 128
128
B
282 296Right-handed alpha
Helix 129
129
B
308 322Right-handed alpha
Helix 130
130
B
327 342Right-handed alpha
Helix 131
131
B
346 361Right-handed alpha
Helix 132
132
B
363 381Right-handed alpha
Helix 133
133
B
395 409Right-handed alpha
Helix 134
134
B
414 437Right-handed alpha
Helix 135
135
B
441 451Right-handed alpha
Helix 136
136
B
454 468Right-handed alpha
Helix 137
137
B
477 490Right-handed alpha
Helix 138
138
B
492 500Right-handed alpha
Helix 139
139
B
529 544Right-handed alpha
Helix 140
140
B
550 565Right-handed alpha
Helix 141
141
B
570 583Right-handed alpha
Helix 142
142
B
589 605Right-handed alpha
Helix 143
143
B
613 627Right-handed alpha
Helix 144
144
B
628 634Right-handed alpha
Helix 145
145
B
634 648Right-handed alpha
Helix 146
146
B
656 665Right-handed alpha
Helix 147
147
B
671 687Right-handed alpha
Helix 148
148
B
694 712Right-handed alpha
Helix 149
149
B
716 730Right-handed alpha
Helix 150
150
B
735 748Right-handed alpha
Helix 151
151
B
757 772Right-handed alpha
Helix 152
152
B
777 794Right-handed alpha
Helix 153
153
B
799 815Right-handed alpha
Helix 154
154
B
826 834Right-handed alpha
Helix 155
155
B
841 856Right-handed alpha
Helix 156
156
B
858 865Right-handed alpha
Helix 157
157
B
884 891Right-handed alpha
Helix 158
158
B
898 914Right-handed alpha
Helix 159
159
B
919 935Right-handed alpha
Helix 160
160
B
942 955Right-handed alpha
Helix 161
161
B
958 973Right-handed alpha
Helix 162
162
B
979 990Right-handed alpha
Helix 163
163
B
1003 1013Right-handed alpha
Helix 164
164
B
1018 1035Right-handed alpha
Helix 165
165
B
1041 1056Right-handed alpha
Helix 166
166
B
1061 1072Right-handed alpha
Helix 167
167
B
1079 1095Right-handed alpha
Helix 168
168
B
1098 1113Right-handed alpha
Helix 169
169
B
1118 1134Right-handed alpha
Helix 170
170
B
1137 1149Right-handed alpha
Helix 171
171
B
1159 1171Right-handed alpha
Helix 172
172
B
1176 1180Right-handed 310
Helix 173
173
B
1201 1214Right-handed alpha
Helix 174
174
B
1218 1231Right-handed alpha
Helix 175
175
B
1236 1242Right-handed alpha
Helix 176
176
B
1243 1245Right-handed 310
Helix 177
177
B
1248 1265Right-handed alpha
Helix 178
178
B
1275 1289Right-handed alpha
Helix 179
179
B
1299 1312Right-handed alpha
Helix 180
180
B
1318 1330Right-handed alpha
Helix 181
181
B
1333 1345Right-handed alpha
Helix 182
182
B
1347 1362Right-handed alpha
Helix 183
183
B
1363 1378Right-handed alpha
Helix 184
184
B
1382 1392Right-handed alpha
Helix 185
185
B
1395 1405Right-handed alpha
Helix 186
186
B
1412 1424Right-handed alpha
Helix 187
187
B
1428 1440Right-handed alpha
Helix 188
188
B
1444 1460Right-handed alpha
Helix 189
189
B
1462 1472Right-handed alpha
Helix 190
190
B
1477 1491Right-handed alpha
Helix 191
191
B
1494 1515Right-handed alpha
Helix 192
192
B
1523 1545Right-handed alpha
Helix 193
193
B
1551 1566Right-handed alpha
Helix 194
194
B
1569 1583Right-handed alpha
Helix 195
195
B
1590 1603Right-handed alpha
Helix 196
196
B
1604 1618Right-handed alpha
Helix 197
197
B
1632 1647Right-handed alpha
Helix 198
198
B
1648 1668Right-handed alpha
Helix 199
199
B
1687 1712Right-handed alpha
Helix 200
200
B
1719 1733Right-handed alpha
Helix 201
201
B
1739 1744Right-handed alpha
Helix 202
202
B
1744 1764Right-handed alpha
Helix 203
203
B
1783 1789Right-handed alpha
Helix 204
204
B
1794 1813Right-handed alpha
Helix 205
205
B
1815 1831Right-handed alpha
Helix 206
206
B
1833 1848Right-handed alpha
Helix 207
207
B
1849 1854Right-handed alpha
Helix 208
208
B
1855 1861Right-handed alpha
Helix 209
209
B
1868 1884Right-handed alpha
Helix 210
210
B
1890 1899Right-handed alpha
Helix 211
211
B
1902 1918Right-handed alpha
Helix 212
212
B
1919 1937Right-handed alpha
Helix 213
213
B
1939 1957Right-handed alpha
Helix 214
214
B
1961 1978Right-handed alpha
Helix 215
215
B
1988 2007Right-handed alpha
Helix 216
216
B
2010 2035Right-handed alpha
Helix 217
217
B
2044 2050Right-handed alpha
Helix 218
218
B
2056 2060Right-handed 310
Helix 219
219
B
2108 2129Right-handed alpha
Helix 220
220
B
2163 2173Right-handed alpha
Helix 221
221
B
2180 2189Right-handed alpha
Helix 222
222
B
2196 2211Right-handed alpha
Helix 223
223
B
2213 2224Right-handed alpha
Helix 224
224
B
2227 2252Right-handed alpha
Helix 225
225
B
2280 2285Right-handed alpha
Helix 226
226
B
2297 2305Right-handed alpha
Helix 227
227
B
2311 2326Right-handed alpha
Helix 228
228
B
2329 2340Right-handed alpha
Helix 229
229
B
2344 2354Right-handed alpha
Helix 230
230
B
2369 2373Right-handed 310
Helix 231
231
B
2377 2383Right-handed alpha
Helix 232
232
B
2386 2409Right-handed alpha
Helix 233
233
B
2420 2435Right-handed alpha
Helix 234
234
B
2436 2441Right-handed alpha
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There are 26 sheets in PDB entry 5FVM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, A, DB, C, DD, DE, DF, G, DH, DI, DJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2037 2039first strand
Strand 2
A
2076 2078anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2070 2072first strand
Strand 2
A
2088 2093anti-parallel
Strand 3
A
2099 2104anti-parallel
Strand 4
A
2152 2154anti-parallel
Strand 5
A
2145 2146anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2160 2162first strand
Strand 2
A
2261 2264anti-parallel
Strand 3
A
2271 2272anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2037 2039first strand
Strand 2
B
2076 2078anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2070 2072first strand
Strand 2
B
2088 2093anti-parallel
Strand 3
B
2099 2104anti-parallel
Strand 4
B
2152 2154anti-parallel
Strand 5
B
2145 2146anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2160 2162first strand
Strand 2
B
2261 2264anti-parallel
Strand 3
B
2271 2272anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
13 17anti-parallel
Strand 3
C
28 29anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 49first strand
Strand 2
C
54 59anti-parallel
Strand 3
C
69 72anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 83first strand
Strand 2
C
90 94anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
113 114anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 133first strand
Strand 2
C
141 142anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 166first strand
Strand 2
C
175 178anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 187first strand
Strand 2
C
198 204anti-parallel
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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 215first strand
Strand 2
C
222 226anti-parallel
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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 235first strand
Strand 2
C
241 246anti-parallel
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There are 2 strands in CJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 276first strand
Strand 2
C
285 288anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
13 17anti-parallel
Strand 3
D
28 29anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 49first strand
Strand 2
D
54 59anti-parallel
Strand 3
D
69 72anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 83first strand
Strand 2
D
90 94anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 99first strand
Strand 2
D
113 114anti-parallel
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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 133first strand
Strand 2
D
141 142anti-parallel
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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 166first strand
Strand 2
D
175 178anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 187first strand
Strand 2
D
198 204anti-parallel
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There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
210 215first strand
Strand 2
D
222 226anti-parallel
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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 235first strand
Strand 2
D
241 246anti-parallel
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There are 2 strands in DJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
274 276first strand
Strand 2
D
285 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il