Analysis of interatomic Contacts of Structural Units in PDB entry:
5FX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FX8 entry

There are 3 chains in PDB entry 5FX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 46VAL 618
B
 TYR 47VAL 618
U
 ALA 20VAL 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5FX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 70Right-handed alpha
Helix 2
2
A
86 125Right-handed alpha
Helix 3
3
A
130 138Right-handed 310
Helix 4
4
A
160 167Right-handed alpha
Helix 5
5
A
168 170Right-handed 310
Helix 6
6
A
191 200Right-handed alpha
Helix 7
7
A
202 209Right-handed alpha
Helix 8
8
A
218 223Right-handed 310
Helix 9
9
A
267 306Right-handed alpha
Helix 10
10
A
312 322Right-handed alpha
Helix 11
11
A
324 326Right-handed 310
Helix 12
12
A
327 336Right-handed alpha
Helix 13
13
A
341 347Right-handed alpha
Helix 14
14
A
350 364Right-handed alpha
Helix 15
15
A
369 372Right-handed 310
Helix 16
16
A
373 381Right-handed alpha
Helix 17
17
A
395 421Right-handed alpha
Helix 18
18
A
427 432Right-handed alpha
Helix 19
19
A
433 445Right-handed alpha
Helix 20
20
A
459 476Right-handed alpha
Helix 21
21
A
476 482Right-handed alpha
Helix 22
22
A
484 489Right-handed alpha
Helix 23
23
A
525 540Right-handed alpha
Helix 24
24
A
551 554Right-handed 310
Helix 25
25
A
557 564Right-handed alpha
Helix 26
26
A
565 588Right-handed alpha
Helix 27
27
B
55 70Right-handed alpha
Helix 28
28
B
86 125Right-handed alpha
Helix 29
29
B
130 138Right-handed 310
Helix 30
30
B
160 167Right-handed alpha
Helix 31
31
B
168 170Right-handed 310
Helix 32
32
B
191 200Right-handed alpha
Helix 33
33
B
202 209Right-handed alpha
Helix 34
34
B
218 223Right-handed 310
Helix 35
35
B
267 290Right-handed alpha
Helix 36
36
B
290 306Right-handed alpha
Helix 37
37
B
312 322Right-handed alpha
Helix 38
38
B
324 326Right-handed 310
Helix 39
39
B
327 336Right-handed alpha
Helix 40
40
B
341 347Right-handed alpha
Helix 41
41
B
350 364Right-handed alpha
Helix 42
42
B
369 372Right-handed 310
Helix 43
43
B
373 381Right-handed alpha
Helix 44
44
B
385 389Right-handed 310
Helix 45
45
B
395 421Right-handed alpha
Helix 46
46
B
433 445Right-handed alpha
Helix 47
47
B
459 476Right-handed alpha
Helix 48
48
B
476 482Right-handed alpha
Helix 49
49
B
484 489Right-handed alpha
Helix 50
50
B
525 540Right-handed alpha
Helix 51
51
B
551 554Right-handed 310
Helix 52
52
B
557 564Right-handed alpha
Helix 53
53
B
565 588Right-handed alpha
Helix 54
54
U
134 140Right-handed alpha
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There are 12 sheets in PDB entry 5FX8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, UA, UB, UC, UD, UE, UF, UG, UH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
83 85anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
212 216anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
246 253anti-parallel
Strand 5
A
261 262anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
83 85anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
212 216anti-parallel
Strand 3
B
235 241anti-parallel
Strand 4
B
246 253anti-parallel
Strand 5
B
261 262anti-parallel
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There are 8 strands in UA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
23 30first strand
Strand 2
U
44 50anti-parallel
Strand 3
U
120 133anti-parallel
Strand 4
U
331 338anti-parallel
Strand 5
U
87 91parallel
Strand 6
U
96 103anti-parallel
Strand 7
U
108 113anti-parallel
Strand 8
U
64 68anti-parallel
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There are 4 strands in UB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
23 30first strand
Strand 2
U
44 50anti-parallel
Strand 3
U
120 133anti-parallel
Strand 4
U
73 74anti-parallel
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There are 3 strands in UC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
37 38first strand
Strand 2
U
160 163parallel
Strand 3
U
145 147anti-parallel
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There are 2 strands in UD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
150 151first strand
Strand 2
U
156 157anti-parallel
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There are 5 strands in UE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
172 177first strand
Strand 2
U
181 189anti-parallel
Strand 3
U
279 287anti-parallel
Strand 4
U
208 219anti-parallel
Strand 5
U
246 247anti-parallel
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There are 5 strands in UF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
256 261first strand
Strand 2
U
265 271anti-parallel
Strand 3
U
195 205anti-parallel
Strand 4
U
294 305anti-parallel
Strand 5
U
313 318parallel
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There are 5 strands in UG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
256 261first strand
Strand 2
U
265 271anti-parallel
Strand 3
U
195 205anti-parallel
Strand 4
U
294 305anti-parallel
Strand 5
U
322 323anti-parallel
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There are 2 strands in UH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
313 318first strand
Strand 2
U
294 305parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il