Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FXE entry

There are 2 chains in PDB entry 5FXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 526
B
 THR 2LEU 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 5FXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 26Right-handed alpha
Helix 2
2
A
33 39Right-handed alpha
Helix 3
3
A
62 77Right-handed alpha
Helix 4
4
A
130 141Right-handed alpha
Helix 5
5
A
156 163Right-handed alpha
Helix 6
6
A
173 177Right-handed alpha
Helix 7
7
A
194 198Right-handed 310
Helix 8
8
A
215 220Right-handed 310
Helix 9
9
A
250 252Right-handed 310
Helix 10
10
A
253 266Right-handed alpha
Helix 11
11
A
280 288Right-handed alpha
Helix 12
12
A
289 293Right-handed 310
Helix 13
13
A
301 313Right-handed alpha
Helix 14
14
A
326 342Right-handed alpha
Helix 15
15
A
360 370Right-handed alpha
Helix 16
16
A
376 384Right-handed 310
Helix 17
17
A
400 418Right-handed alpha
Helix 18
18
A
445 466Right-handed alpha
Helix 19
19
A
474 476Right-handed 310
Helix 20
20
A
477 485Right-handed alpha
Helix 21
21
A
486 504Right-handed alpha
Helix 22
22
A
512 516Right-handed 310
Helix 23
23
A
518 522Right-handed 310
Helix 24
24
B
10 26Right-handed alpha
Helix 25
25
B
33 38Right-handed alpha
Helix 26
26
B
39 41Right-handed 310
Helix 27
27
B
62 77Right-handed alpha
Helix 28
28
B
130 141Right-handed alpha
Helix 29
29
B
156 163Right-handed alpha
Helix 30
30
B
173 177Right-handed alpha
Helix 31
31
B
194 198Right-handed 310
Helix 32
32
B
215 220Right-handed 310
Helix 33
33
B
250 252Right-handed 310
Helix 34
34
B
253 266Right-handed alpha
Helix 35
35
B
280 288Right-handed alpha
Helix 36
36
B
289 293Right-handed 310
Helix 37
37
B
301 313Right-handed alpha
Helix 38
38
B
326 342Right-handed alpha
Helix 39
39
B
357 359Right-handed 310
Helix 40
40
B
360 370Right-handed alpha
Helix 41
41
B
376 384Right-handed 310
Helix 42
42
B
400 418Right-handed alpha
Helix 43
43
B
445 466Right-handed alpha
Helix 44
44
B
474 476Right-handed 310
Helix 45
45
B
477 485Right-handed alpha
Helix 46
46
B
486 504Right-handed alpha
Helix 47
47
B
512 516Right-handed 310
Helix 48
48
B
518 522Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 5FXE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
56 58anti-parallel
Strand 3
A
102 105parallel
Strand 4
A
80 83parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
226 233anti-parallel
Strand 4
A
178 184anti-parallel
Strand 5
A
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
241 248anti-parallel
Strand 3
A
317 324anti-parallel
Strand 4
A
276 279anti-parallel
Strand 5
A
421 428anti-parallel
Strand 6
A
433 442anti-parallel
Strand 7
A
396 397parallel
Back to list of sheets
Back to top of page

There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
241 248anti-parallel
Strand 3
A
317 324anti-parallel
Strand 4
A
276 279anti-parallel
Strand 5
A
421 428anti-parallel
Strand 6
A
433 442anti-parallel
Strand 7
A
388 393anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
433 442parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
56 58anti-parallel
Strand 3
B
102 105parallel
Strand 4
B
80 83parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
122 125anti-parallel
Strand 3
B
226 233anti-parallel
Strand 4
B
178 184anti-parallel
Strand 5
B
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
241 248anti-parallel
Strand 3
B
317 324anti-parallel
Strand 4
B
276 279anti-parallel
Strand 5
B
423 428anti-parallel
Strand 6
B
433 442anti-parallel
Strand 7
B
396 397parallel
Back to list of sheets
Back to top of page

There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
241 248anti-parallel
Strand 3
B
317 324anti-parallel
Strand 4
B
276 279anti-parallel
Strand 5
B
423 428anti-parallel
Strand 6
B
433 442anti-parallel
Strand 7
B
388 393anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 397first strand
Strand 2
B
433 442parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il