Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FXI entry

There are 4 chains in PDB entry 5FXI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 859
B	PRO 32	PHE 842
C	LYS 25	ALA 857
D	PRO 32	PHE 842

There are114 helices in PDB entry 5FXI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	36	52	Right-handed alpha
Helix 2	2	A	70	86	Right-handed alpha
Helix 3	3	A	105	114	Right-handed alpha
Helix 4	4	A	125	130	Right-handed 310
Helix 5	5	A	143	145	Right-handed 310
Helix 6	6	A	146	159	Right-handed alpha
Helix 7	7	A	170	187	Right-handed alpha
Helix 8	8	A	188	190	Right-handed 310
Helix 9	9	A	225	235	Right-handed alpha
Helix 10	10	A	245	260	Right-handed alpha
Helix 11	11	A	271	276	Right-handed alpha
Helix 12	12	A	278	283	Right-handed alpha
Helix 13	13	A	297	318	Right-handed alpha
Helix 14	14	A	337	349	Right-handed alpha
Helix 15	15	A	478	491	Right-handed alpha
Helix 16	16	A	521	528	Right-handed alpha
Helix 17	17	A	541	548	Right-handed alpha
Helix 18	18	A	580	605	Right-handed alpha
Helix 19	19	A	624	637	Right-handed alpha
Helix 20	20	A	647	677	Right-handed alpha
Helix 21	21	A	690	695	Right-handed alpha
Helix 22	22	A	708	714	Right-handed alpha
Helix 23	23	A	720	731	Right-handed alpha
Helix 24	24	A	734	745	Right-handed alpha
Helix 25	25	A	754	764	Right-handed alpha
Helix 26	26	A	787	803	Right-handed alpha
Helix 27	27	A	804	813	Right-handed alpha
Helix 28	28	A	814	817	Right-handed 310
Helix 29	29	A	831	859	Right-handed alpha
Helix 30	30	B	47	57	Right-handed alpha
Helix 31	31	B	79	92	Right-handed alpha
Helix 32	32	B	106	120	Right-handed alpha
Helix 33	33	B	127	131	Right-handed 310
Helix 34	34	B	149	164	Right-handed alpha
Helix 35	35	B	178	192	Right-handed alpha
Helix 36	36	B	214	221	Right-handed alpha
Helix 37	37	B	233	247	Right-handed alpha
Helix 38	38	B	259	264	Right-handed alpha
Helix 39	39	B	288	310	Right-handed alpha
Helix 40	40	B	323	328	Right-handed alpha
Helix 41	41	B	329	331	Right-handed 310
Helix 42	42	B	334	340	Right-handed alpha
Helix 43	43	B	459	473	Right-handed alpha
Helix 44	44	B	496	503	Right-handed alpha
Helix 45	45	B	516	523	Right-handed alpha
Helix 46	46	B	551	555	Right-handed 310
Helix 47	47	B	556	581	Right-handed alpha
Helix 48	48	B	601	614	Right-handed alpha
Helix 49	49	B	625	656	Right-handed alpha
Helix 50	50	B	668	673	Right-handed alpha
Helix 51	51	B	689	699	Right-handed alpha
Helix 52	52	B	699	710	Right-handed alpha
Helix 53	53	B	713	724	Right-handed alpha
Helix 54	54	B	733	742	Right-handed alpha
Helix 55	55	B	772	785	Right-handed alpha
Helix 56	56	B	788	796	Right-handed alpha
Helix 57	57	B	816	842	Right-handed alpha
Helix 58	58	C	36	53	Right-handed alpha
Helix 59	59	C	70	86	Right-handed alpha
Helix 60	60	C	105	114	Right-handed alpha
Helix 61	61	C	125	130	Right-handed 310
Helix 62	62	C	143	145	Right-handed 310
Helix 63	63	C	146	159	Right-handed alpha
Helix 64	64	C	170	187	Right-handed alpha
Helix 65	65	C	188	190	Right-handed 310
Helix 66	66	C	225	235	Right-handed alpha
Helix 67	67	C	245	260	Right-handed alpha
Helix 68	68	C	271	276	Right-handed alpha
Helix 69	69	C	278	283	Right-handed alpha
Helix 70	70	C	297	318	Right-handed alpha
Helix 71	71	C	337	349	Right-handed alpha
Helix 72	72	C	478	491	Right-handed alpha
Helix 73	73	C	521	528	Right-handed alpha
Helix 74	74	C	541	548	Right-handed alpha
Helix 75	75	C	580	605	Right-handed alpha
Helix 76	76	C	624	637	Right-handed alpha
Helix 77	77	C	647	677	Right-handed alpha
Helix 78	78	C	690	695	Right-handed alpha
Helix 79	79	C	708	714	Right-handed alpha
Helix 80	80	C	720	731	Right-handed alpha
Helix 81	81	C	734	745	Right-handed alpha
Helix 82	82	C	754	764	Right-handed alpha
Helix 83	83	C	787	803	Right-handed alpha
Helix 84	84	C	804	813	Right-handed alpha
Helix 85	85	C	814	817	Right-handed 310
Helix 86	86	C	831	857	Right-handed alpha
Helix 87	87	D	47	57	Right-handed alpha
Helix 88	88	D	79	92	Right-handed alpha
Helix 89	89	D	106	120	Right-handed alpha
Helix 90	90	D	127	131	Right-handed 310
Helix 91	91	D	149	164	Right-handed alpha
Helix 92	92	D	178	192	Right-handed alpha
Helix 93	93	D	214	221	Right-handed alpha
Helix 94	94	D	233	247	Right-handed alpha
Helix 95	95	D	259	264	Right-handed alpha
Helix 96	96	D	288	310	Right-handed alpha
Helix 97	97	D	323	328	Right-handed alpha
Helix 98	98	D	329	331	Right-handed 310
Helix 99	99	D	334	340	Right-handed alpha
Helix 100	100	D	459	473	Right-handed alpha
Helix 101	101	D	496	503	Right-handed alpha
Helix 102	102	D	516	523	Right-handed alpha
Helix 103	103	D	551	555	Right-handed 310
Helix 104	104	D	556	578	Right-handed alpha
Helix 105	105	D	601	614	Right-handed alpha
Helix 106	106	D	625	656	Right-handed alpha
Helix 107	107	D	668	673	Right-handed alpha
Helix 108	108	D	689	699	Right-handed alpha
Helix 109	109	D	699	710	Right-handed alpha
Helix 110	110	D	713	724	Right-handed alpha
Helix 111	111	D	733	742	Right-handed alpha
Helix 112	112	D	772	785	Right-handed alpha
Helix 113	113	D	788	796	Right-handed alpha
Helix 114	114	D	816	842	Right-handed alpha

There are 32 sheets in PDB entry 5FXI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, A, DB, C, DD, DE, DF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	26	30	parallel
Strand 3	A	89	91	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	165	167	parallel
Strand 3	A	239	243	parallel
Strand 4	A	267	269	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	375	377	anti-parallel
Strand 3	A	382	384	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	367	368	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	393	395	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	494	499	parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	472	476	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	782	783	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	556	first strand
Strand 2	A	778	779	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	562	first strand
Strand 2	A	750	753	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	35	40	parallel
Strand 3	B	97	99	parallel
Strand 4	B	123	125	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	171	173	parallel
Strand 3	B	228	231	parallel
Strand 4	B	256	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	361	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	385	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	479	480	parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	434	438	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	532	first strand
Strand 2	B	760	762	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	534	539	anti-parallel
Strand 3	B	748	750	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	26	30	parallel
Strand 3	C	89	91	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	165	167	parallel
Strand 3	C	239	243	parallel
Strand 4	C	267	269	parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	375	377	anti-parallel
Strand 3	C	382	384	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	367	368	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	388	first strand
Strand 2	C	393	395	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	423	first strand
Strand 2	C	494	499	parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	460	first strand
Strand 2	C	471	476	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	550	first strand
Strand 2	C	782	783	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	555	556	first strand
Strand 2	C	778	779	anti-parallel

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There are 2 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	562	first strand
Strand 2	C	750	753	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	35	40	parallel
Strand 3	D	97	99	parallel
Strand 4	D	123	125	parallel
Strand 5	D	143	145	parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	171	173	parallel
Strand 3	D	228	231	parallel
Strand 4	D	256	258	parallel
Strand 5	D	278	282	parallel
Strand 6	D	361	367	anti-parallel
Strand 7	D	373	380	anti-parallel
Strand 8	D	383	385	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	479	480	parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	434	438	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	760	762	anti-parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	729	732	first strand
Strand 2	D	534	539	anti-parallel
Strand 3	D	748	750	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FXI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXI