Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FXT entry

There is 1 chain in PDB entry 5FXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2LEU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5FXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 20Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
73 82Right-handed alpha
Helix 4
4
A
112 116Right-handed 310
Helix 5
5
A
133 143Right-handed alpha
Helix 6
6
A
144 146Right-handed 310
Helix 7
7
A
152 155Right-handed 310
Helix 8
8
A
202 212Right-handed alpha
Helix 9
9
A
245 250Right-handed alpha
Helix 10
10
A
262 274Right-handed alpha
Helix 11
11
A
323 332Right-handed alpha
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There are 4 sheets in PDB entry 5FXT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
3 6anti-parallel
Strand 3
A
88 92anti-parallel
Strand 4
A
96 101anti-parallel
Strand 5
A
104 109anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
52 59anti-parallel
Strand 5
A
232 237anti-parallel
Strand 6
A
224 228anti-parallel
Strand 7
A
216 220anti-parallel
Strand 8
A
126 130anti-parallel
Strand 9
A
190 191anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 201first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
178 185anti-parallel
Strand 5
A
367 370anti-parallel
Strand 6
A
349 353anti-parallel
Strand 7
A
337 342anti-parallel
Strand 8
A
256 261anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 306first strand
Strand 2
A
287 292anti-parallel
Strand 3
A
278 284anti-parallel
Strand 4
A
317 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il