Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FXW entry

There are 2 chains in PDB entry 5FXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 880SER 1344
B
 ASP 881SER 1344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5FXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
880 884Right-handed 310
Helix 2
AA2
A
894 900Right-handed alpha
Helix 3
AA3
A
900 909Right-handed alpha
Helix 4
AA4
A
919 925Right-handed alpha
Helix 5
AA5
A
927 931Right-handed 310
Helix 6
AA6
A
932 941Right-handed alpha
Helix 7
AA7
A
979 998Right-handed alpha
Helix 8
AA8
A
1043 1050Right-handed alpha
Helix 9
AA9
A
1051 1053Right-handed 310
Helix 10
AB1
A
1054 1058Right-handed 310
Helix 11
AB2
A
1064 1069Right-handed alpha
Helix 12
AB3
A
1095 1099Right-handed 310
Helix 13
AB4
A
1117 1119Right-handed 310
Helix 14
AB5
A
1120 1131Right-handed alpha
Helix 15
AB6
A
1143 1150Right-handed alpha
Helix 16
AB7
A
1192 1209Right-handed alpha
Helix 17
AB8
A
1216 1228Right-handed alpha
Helix 18
AB9
A
1232 1260Right-handed alpha
Helix 19
AC1
A
1293 1298Right-handed alpha
Helix 20
AC2
A
1305 1313Right-handed alpha
Helix 21
AC3
A
1326 1337Right-handed alpha
Helix 22
AC4
B
894 899Right-handed alpha
Helix 23
AC5
B
900 909Right-handed alpha
Helix 24
AC6
B
919 925Right-handed alpha
Helix 25
AC7
B
927 931Right-handed 310
Helix 26
AC8
B
932 940Right-handed alpha
Helix 27
AC9
B
979 998Right-handed alpha
Helix 28
AD1
B
1043 1051Right-handed alpha
Helix 29
AD2
B
1052 1053Right-handed 310
Helix 30
AD3
B
1054 1058Right-handed 310
Helix 31
AD4
B
1064 1068Right-handed 310
Helix 32
AD5
B
1095 1099Right-handed 310
Helix 33
AD6
B
1117 1119Right-handed 310
Helix 34
AD7
B
1120 1131Right-handed alpha
Helix 35
AD8
B
1143 1150Right-handed alpha
Helix 36
AD9
B
1192 1209Right-handed alpha
Helix 37
AE1
B
1216 1228Right-handed alpha
Helix 38
AE2
B
1232 1260Right-handed alpha
Helix 39
AE3
B
1293 1298Right-handed alpha
Helix 40
AE4
B
1305 1313Right-handed alpha
Helix 41
AE5
B
1326 1336Right-handed alpha
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There are 8 sheets in PDB entry 5FXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
889 891first strand
Strand 2
A
914 918parallel
Strand 3
A
1164 1167anti-parallel
Strand 4
A
1100 1108anti-parallel
Strand 5
A
1181 1188anti-parallel
Strand 6
A
1080 1084anti-parallel
Strand 7
A
1028 1036anti-parallel
Strand 8
A
944 951anti-parallel
Strand 9
A
972 978anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1089 1093first strand
Strand 2
A
1172 1177anti-parallel
Strand 3
A
1111 1116anti-parallel
Strand 4
A
1155 1159anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1264 1266first strand
Strand 2
A
1319 1323parallel
Strand 3
A
1288 1292anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1276 1277first strand
Strand 2
A
1284 1285anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
889 891first strand
Strand 2
B
914 918parallel
Strand 3
B
1164 1167anti-parallel
Strand 4
B
1100 1108anti-parallel
Strand 5
B
1181 1188anti-parallel
Strand 6
B
1080 1084anti-parallel
Strand 7
B
1028 1036anti-parallel
Strand 8
B
944 951anti-parallel
Strand 9
B
972 978anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1089 1093first strand
Strand 2
B
1172 1177anti-parallel
Strand 3
B
1111 1116anti-parallel
Strand 4
B
1155 1159anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1264 1266first strand
Strand 2
B
1319 1323parallel
Strand 3
B
1288 1292anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1276 1277first strand
Strand 2
B
1284 1285anti-parallel
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