Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FYA entry

There are 2 chains in PDB entry 5FYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 23LEU 311
B
 ARG 22ARG 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5FYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 36Right-handed 310
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
74 85Right-handed alpha
Helix 5
5
A
128 145Right-handed alpha
Helix 6
6
A
146 149Right-handed 310
Helix 7
7
A
154 157Right-handed 310
Helix 8
8
A
180 189Right-handed alpha
Helix 9
9
A
208 213Right-handed alpha
Helix 10
10
A
215 222Right-handed alpha
Helix 11
11
A
244 266Right-handed alpha
Helix 12
12
A
286 288Right-handed 310
Helix 13
13
A
289 303Right-handed alpha
Helix 14
14
A
304 309Right-handed alpha
Helix 15
15
B
33 36Right-handed 310
Helix 16
16
B
37 49Right-handed alpha
Helix 17
17
B
60 71Right-handed alpha
Helix 18
18
B
74 85Right-handed alpha
Helix 19
19
B
130 145Right-handed alpha
Helix 20
20
B
155 157Right-handed 310
Helix 21
21
B
180 189Right-handed alpha
Helix 22
22
B
208 213Right-handed alpha
Helix 23
23
B
215 222Right-handed alpha
Helix 24
24
B
238 242Right-handed 310
Helix 25
25
B
244 266Right-handed alpha
Helix 26
26
B
286 288Right-handed 310
Helix 27
27
B
289 304Right-handed alpha
Helix 28
28
B
304 310Right-handed alpha
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There are 7 sheets in PDB entry 5FYA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
161 167anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
203 207parallel
Strand 3
A
161 167anti-parallel
Strand 4
A
173 176anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
203 207parallel
Strand 3
A
161 167anti-parallel
Strand 4
A
55 59parallel
Strand 5
A
25 29parallel
Strand 6
A
226 230parallel
Strand 7
A
273 275parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
161 167anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
203 207parallel
Strand 3
B
161 167anti-parallel
Strand 4
B
173 176anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
203 207parallel
Strand 3
B
161 167anti-parallel
Strand 4
B
55 59parallel
Strand 5
B
25 29parallel
Strand 6
B
226 230parallel
Strand 7
B
273 275parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
178 179anti-parallel
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