Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FYD entry

There are 2 chains in PDB entry 5FYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 259
B
 MET 1SER 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5FYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
18 31Right-handed alpha
Helix 3
3
A
41 57Right-handed alpha
Helix 4
4
A
71 81Right-handed alpha
Helix 5
5
A
99 103Right-handed 310
Helix 6
6
A
104 116Right-handed alpha
Helix 7
7
A
116 133Right-handed alpha
Helix 8
8
A
144 149Right-handed alpha
Helix 9
9
A
153 174Right-handed alpha
Helix 10
10
A
191 196Right-handed alpha
Helix 11
11
A
201 209Right-handed alpha
Helix 12
12
A
213 225Right-handed alpha
Helix 13
13
A
234 248Right-handed alpha
Helix 14
14
A
249 259Right-handed alpha
Helix 15
15
B
2 7Right-handed alpha
Helix 16
16
B
18 31Right-handed alpha
Helix 17
17
B
41 57Right-handed alpha
Helix 18
18
B
71 81Right-handed alpha
Helix 19
19
B
99 103Right-handed 310
Helix 20
20
B
104 116Right-handed alpha
Helix 21
21
B
116 134Right-handed alpha
Helix 22
22
B
144 149Right-handed alpha
Helix 23
23
B
153 175Right-handed alpha
Helix 24
24
B
191 197Right-handed alpha
Helix 25
25
B
213 225Right-handed alpha
Helix 26
26
B
234 248Right-handed alpha
Helix 27
27
B
249 259Right-handed alpha
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There are 2 sheets in PDB entry 5FYD. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
34 39parallel
Strand 3
A
10 14parallel
Strand 4
A
85 90parallel
Strand 5
A
136 143parallel
Strand 6
A
179 186parallel
Strand 7
A
230 232parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
34 39parallel
Strand 3
B
10 14parallel
Strand 4
B
85 90parallel
Strand 5
B
136 143parallel
Strand 6
B
179 186parallel
Strand 7
B
230 232parallel
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