Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FYF entry

There are 2 chains in PDB entry 5FYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 53SER 474
B
 PHE 56SER 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5FYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 67Right-handed 310
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
84 96Right-handed alpha
Helix 4
4
A
114 124Right-handed alpha
Helix 5
5
A
147 151Right-handed 310
Helix 6
6
A
154 164Right-handed alpha
Helix 7
7
A
165 167Right-handed 310
Helix 8
8
A
168 190Right-handed alpha
Helix 9
9
A
198 215Right-handed alpha
Helix 10
10
A
218 221Right-handed 310
Helix 11
11
A
222 234Right-handed alpha
Helix 12
12
A
235 240Right-handed alpha
Helix 13
13
A
245 271Right-handed alpha
Helix 14
14
A
280 288Right-handed alpha
Helix 15
15
A
293 296Right-handed 310
Helix 16
16
A
297 330Right-handed alpha
Helix 17
17
A
331 340Right-handed alpha
Helix 18
18
A
343 356Right-handed alpha
Helix 19
19
A
385 390Right-handed alpha
Helix 20
20
A
408 412Right-handed 310
Helix 21
21
A
424 442Right-handed alpha
Helix 22
22
B
63 67Right-handed 310
Helix 23
23
B
68 72Right-handed 310
Helix 24
24
B
84 96Right-handed alpha
Helix 25
25
B
114 124Right-handed alpha
Helix 26
26
B
147 151Right-handed 310
Helix 27
27
B
154 164Right-handed alpha
Helix 28
28
B
165 167Right-handed 310
Helix 29
29
B
168 189Right-handed alpha
Helix 30
30
B
198 215Right-handed alpha
Helix 31
31
B
218 220Right-handed 310
Helix 32
32
B
221 234Right-handed alpha
Helix 33
33
B
235 240Right-handed alpha
Helix 34
34
B
245 273Right-handed alpha
Helix 35
35
B
280 288Right-handed alpha
Helix 36
36
B
293 296Right-handed 310
Helix 37
37
B
297 330Right-handed alpha
Helix 38
38
B
331 340Right-handed alpha
Helix 39
39
B
343 356Right-handed alpha
Helix 40
40
B
385 390Right-handed alpha
Helix 41
41
B
408 412Right-handed 310
Helix 42
42
B
424 442Right-handed alpha
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There are 8 sheets in PDB entry 5FYF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
109 112anti-parallel
Strand 3
A
381 384parallel
Strand 4
A
361 365anti-parallel
Strand 5
A
128 129anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
467 472anti-parallel
Strand 3
A
443 448anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
374 376anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
463 465anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
109 112anti-parallel
Strand 3
B
382 384parallel
Strand 4
B
361 365anti-parallel
Strand 5
B
128 129anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
467 472anti-parallel
Strand 3
B
443 448anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 371first strand
Strand 2
B
374 376anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 454first strand
Strand 2
B
463 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il