Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FYJ entry

There are 5 chains in PDB entry 5FYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 512	LYS 665
D	GLN 1	GLN 225
E	SER 2	GLU 210
G	ALA 31	ARG 510
H	GLN 1	THR 189

There are 25 helices in PDB entry 5FYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	514	521	Right-handed alpha
Helix 2	2	B	531	535	Right-handed 310
Helix 3	3	B	536	547	Right-handed alpha
Helix 4	4	B	565	568	Right-handed 310
Helix 5	5	B	569	595	Right-handed alpha
Helix 6	6	B	618	624	Right-handed alpha
Helix 7	7	B	627	635	Right-handed alpha
Helix 8	8	B	638	664	Right-handed alpha
Helix 9	9	D	28	32	Right-handed 310
Helix 10	10	E	79	83	Right-handed 310
Helix 11	11	E	121	126	Right-handed alpha
Helix 12	12	E	181	186	Right-handed alpha
Helix 13	13	G	98	117	Right-handed alpha
Helix 14	14	G	122	126	Right-handed 310
Helix 15	15	G	335	353	Right-handed alpha
Helix 16	16	G	388	392	Right-handed 310
Helix 17	17	G	475	484	Right-handed alpha
Helix 18	18	H	61	64	Right-handed 310
Helix 19	19	H	100	100	Right-handed 310
Helix 20	20	H	199	202	Right-handed 310
Helix 21	21	L	79	83	Right-handed 310
Helix 22	22	L	124	129	Right-handed 310
Helix 23	23	L	182	187	Right-handed alpha
Helix 24	24	U	61	64	Right-handed 310
Helix 25	25	V	79	83	Right-handed 310

There are 48 sheets in PDB entry 5FYJ. Click on sheet of interest to get list of strands forming it: BA, A, DB, C, DD, DE, DF, G, DH, EA, EB, EC, ED, EE, EF, EG, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ, GK, HA, HB, HC, HD, HE, HF, HG, HH, LA, LB, LC, LD, LE, LF, LG, UA, UB, UC, UD, VA, VB,

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	19	27	anti-parallel
Strand 3	D	74	81	anti-parallel
Strand 4	D	72	72	parallel

Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	19	27	anti-parallel
Strand 3	D	74	81	anti-parallel
Strand 4	D	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	72	first strand
Strand 2	D	74	81	parallel

Back to list of sheets
Back to top of page

There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	47	51	anti-parallel
Strand 6	D	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	127	first strand
Strand 2	D	137	143	anti-parallel
Strand 3	D	179	182	anti-parallel
Strand 4	D	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	200	first strand
Strand 2	D	205	210	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	71	75	anti-parallel
Strand 4	E	62	66	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	92	anti-parallel
Strand 4	E	95	98	parallel

Back to list of sheets
Back to top of page

There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	92	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	85	92	parallel

Back to list of sheets
Back to top of page

There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	134	first strand
Strand 2	E	176	180	anti-parallel
Strand 3	E	159	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	150	first strand
Strand 2	E	191	197	anti-parallel
Strand 3	E	200	203	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in EG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	166	first strand
Strand 2	E	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	130	first strand
Strand 2	G	190	193	anti-parallel
Strand 3	G	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	162	first strand
Strand 2	G	169	177	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	456	parallel

Back to list of sheets
Back to top of page

There are 2 strands in GH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in GI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	360	361	first strand
Strand 2	G	467	470	parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	284	298	anti-parallel
Strand 5	G	330	334	anti-parallel
Strand 6	G	413	421	anti-parallel
Strand 7	G	381	385	anti-parallel
Strand 8	G	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in GJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	360	361	first strand
Strand 2	G	467	470	parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	259	261	parallel

Back to list of sheets
Back to top of page

There are 2 strands in GK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	308	first strand
Strand 2	G	316	323	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	70	72	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	anti-parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	anti-parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	101	first strand
Strand 2	H	88	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	136	143	anti-parallel
Strand 3	H	174	180	anti-parallel
Strand 4	H	167	168	parallel

Back to list of sheets
Back to top of page

There are 4 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	136	143	anti-parallel
Strand 3	H	174	180	anti-parallel
Strand 4	H	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	168	first strand
Strand 2	H	174	180	parallel

Back to list of sheets
Back to top of page

There are 3 strands in HH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	193	197	anti-parallel
Strand 3	H	206	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	103	106	parallel

Back to list of sheets
Back to top of page

There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	71	75	anti-parallel
Strand 3	L	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	34	37	anti-parallel
Strand 3	L	88	89	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	parallel

Back to list of sheets
Back to top of page

There are 4 strands in LE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in LF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	166	167	first strand
Strand 2	L	173	181	parallel

Back to list of sheets
Back to top of page

There are 3 strands in LG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	150	first strand
Strand 2	L	192	197	anti-parallel
Strand 3	L	202	207	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in UA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	6	first strand
Strand 2	U	19	25	anti-parallel
Strand 3	U	77	82	anti-parallel
Strand 4	U	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in UB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	56	59	first strand
Strand 2	U	46	52	anti-parallel
Strand 3	U	34	39	anti-parallel
Strand 4	U	89	94	anti-parallel
Strand 5	U	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in UC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	56	59	first strand
Strand 2	U	46	52	anti-parallel
Strand 3	U	34	39	anti-parallel
Strand 4	U	89	94	anti-parallel
Strand 5	U	107	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in UD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	102	103	first strand
Strand 2	U	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in VA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	19	21	first strand
Strand 2	V	72	75	anti-parallel
Strand 3	V	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in VB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	45	48	first strand
Strand 2	V	33	38	anti-parallel
Strand 3	V	84	90	anti-parallel
Strand 4	V	102	104	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYJ