Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FYK entry

There are 6 chains in PDB entry 5FYK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 514	ASP 664
D	GLN 1	GLN 225
E	SER 2	GLU 210
G	VAL 31	ARG 508
H	GLN 1	PRO 211
L	ALA 6	SER 12

There are 28 helices in PDB entry 5FYK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	523	528	Right-handed 310
Helix 2	2	B	529	534	Right-handed alpha
Helix 3	3	B	536	542	Right-handed alpha
Helix 4	4	B	548	557	Right-handed alpha
Helix 5	5	B	569	596	Right-handed alpha
Helix 6	6	B	618	625	Right-handed alpha
Helix 7	7	B	627	635	Right-handed alpha
Helix 8	8	B	638	664	Right-handed alpha
Helix 9	9	D	28	32	Right-handed 310
Helix 10	10	E	79	83	Right-handed 310
Helix 11	11	E	123	127	Right-handed 310
Helix 12	12	E	181	186	Right-handed alpha
Helix 13	13	G	57	63	Right-handed alpha
Helix 14	14	G	70	74	Right-handed 310
Helix 15	15	G	98	117	Right-handed alpha
Helix 16	16	G	123	126	Right-handed 310
Helix 17	17	G	335	353	Right-handed alpha
Helix 18	18	G	368	373	Right-handed alpha
Helix 19	19	G	425	429	Right-handed 310
Helix 20	20	G	475	484	Right-handed alpha
Helix 21	21	H	62	65	Right-handed 310
Helix 22	22	H	83	87	Right-handed 310
Helix 23	23	H	100	100	Right-handed 310
Helix 24	24	H	199	202	Right-handed 310
Helix 25	25	L	124	129	Right-handed 310
Helix 26	26	L	182	187	Right-handed alpha
Helix 27	27	U	61	64	Right-handed 310
Helix 28	28	V	79	83	Right-handed 310

There are 52 sheets in PDB entry 5FYK. Click on sheet of interest to get list of strands forming it: BA, A, DB, C, DD, DE, DF, G, DH, DI, DJ, DK, EA, EB, EC, ED, EE, EF, EG, EH, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ, GK, GL, HA, HB, HC, HD, HE, HF, HG, LA, LB, LC, LD, LE, LF, UA, UB, UC, UD, VA, VB, VC,

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	22	23	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	68	71	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	22	23	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	18	19	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	77	82	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	88	95	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	88	95	parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	88	95	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	57	59	anti-parallel

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There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	72	first strand
Strand 2	D	74	75	anti-parallel

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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	123	first strand
Strand 2	D	140	143	anti-parallel

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There are 3 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	196	199	anti-parallel
Strand 3	D	208	209	anti-parallel

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There are 2 strands in DK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	180	182	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	70	76	anti-parallel
Strand 4	E	63	66	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	103	106	parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	32	36	anti-parallel
Strand 3	E	87	91	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	179	180	anti-parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	139	first strand
Strand 2	E	172	177	anti-parallel

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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	161	first strand
Strand 2	E	172	177	anti-parallel

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There are 2 strands in EG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	166	first strand
Strand 2	E	172	177	parallel

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There are 4 strands in EH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	147	150	anti-parallel
Strand 3	E	192	197	anti-parallel
Strand 4	E	200	203	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	86	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	208	209	parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	94	first strand
Strand 2	G	236	238	anti-parallel

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There are 4 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	121	first strand
Strand 2	G	200	203	anti-parallel
Strand 3	G	432	435	parallel
Strand 4	G	423	424	anti-parallel

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There are 5 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 2 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	441	456	parallel

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There are 2 strands in GH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	307	parallel

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There are 2 strands in GI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	317	322	first strand
Strand 2	G	284	307	anti-parallel

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There are 6 strands in GJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	parallel
Strand 3	G	413	421	anti-parallel
Strand 4	G	329	334	parallel
Strand 5	G	284	307	anti-parallel
Strand 6	G	317	322	anti-parallel

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There are 9 strands in GK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	parallel
Strand 3	G	413	421	anti-parallel
Strand 4	G	329	334	parallel
Strand 5	G	284	307	anti-parallel
Strand 6	G	441	456	anti-parallel
Strand 7	G	467	470	anti-parallel
Strand 8	G	359	361	parallel
Strand 9	G	393	395	anti-parallel

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There are 6 strands in GL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	parallel
Strand 3	G	413	421	anti-parallel
Strand 4	G	329	334	parallel
Strand 5	G	284	307	anti-parallel
Strand 6	G	271	273	parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	19	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	67	72	anti-parallel

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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	89	100	anti-parallel
Strand 5	H	100	100	anti-parallel

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There are 5 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	89	100	anti-parallel
Strand 5	H	105	106	anti-parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	100	first strand
Strand 2	H	89	100	anti-parallel

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There are 3 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	121	first strand
Strand 2	H	136	143	anti-parallel
Strand 3	H	174	180	anti-parallel

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There are 3 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	194	198	anti-parallel
Strand 3	H	203	205	anti-parallel

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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	71	75	anti-parallel
Strand 3	L	62	64	anti-parallel

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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	parallel

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There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 2 strands in LE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	166	167	first strand
Strand 2	L	173	181	parallel

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There are 3 strands in LF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	151	first strand
Strand 2	L	192	197	anti-parallel
Strand 3	L	202	207	anti-parallel

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There are 2 strands in UA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	4	6	first strand
Strand 2	U	22	24	anti-parallel

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There are 2 strands in UB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	11	first strand
Strand 2	U	109	110	parallel

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There are 3 strands in UC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	18	20	first strand
Strand 2	U	79	82	anti-parallel
Strand 3	U	67	70	anti-parallel

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There are 5 strands in UD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	57	59	first strand
Strand 2	U	45	51	anti-parallel
Strand 3	U	34	39	anti-parallel
Strand 4	U	91	97	anti-parallel
Strand 5	U	100	102	anti-parallel

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There are 4 strands in VA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	5	7	first strand
Strand 2	V	20	24	anti-parallel
Strand 3	V	71	75	anti-parallel
Strand 4	V	62	64	anti-parallel

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There are 3 strands in VB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	33	35	first strand
Strand 2	V	88	90	anti-parallel
Strand 3	V	97	98	anti-parallel

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There are 2 strands in VC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	84	86	first strand
Strand 2	V	102	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FYK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYK