Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FYL entry

There are 6 chains in PDB entry 5FYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 518	ASP 664
D	GLN 1	PHE 224
E	SER 2	GLU 210
G	ALA 31	VAL 505
H	GLN 1	PRO 211
L	ALA 6	GLN 38

There are 26 helices in PDB entry 5FYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	569	596	Right-handed alpha
Helix 2	2	B	619	624	Right-handed alpha
Helix 3	3	B	627	636	Right-handed alpha
Helix 4	4	B	638	664	Right-handed alpha
Helix 5	5	D	28	32	Right-handed 310
Helix 6	6	D	61	64	Right-handed 310
Helix 7	7	D	83	87	Right-handed 310
Helix 8	8	D	201	204	Right-handed 310
Helix 9	9	D	217	224	Right-handed alpha
Helix 10	10	E	79	83	Right-handed 310
Helix 11	11	G	57	62	Right-handed alpha
Helix 12	12	G	96	98	Right-handed 310
Helix 13	13	G	99	116	Right-handed alpha
Helix 14	14	G	122	126	Right-handed 310
Helix 15	15	G	194	199	Right-handed alpha
Helix 16	16	G	335	354	Right-handed alpha
Helix 17	17	G	475	483	Right-handed alpha
Helix 18	18	G	484	486	Right-handed 310
Helix 19	19	H	52	56	Right-handed 310
Helix 20	20	H	63	65	Right-handed 310
Helix 21	21	H	83	87	Right-handed 310
Helix 22	22	H	154	156	Right-handed 310
Helix 23	23	H	199	202	Right-handed 310
Helix 24	24	L	79	83	Right-handed 310
Helix 25	25	L	122	128	Right-handed alpha
Helix 26	26	L	182	189	Right-handed alpha

There are 40 sheets in PDB entry 5FYL. Click on sheet of interest to get list of strands forming it: BA, A, DB, C, DD, DE, DF, G, DH, DI, DJ, EA, EB, EC, ED, EE, EF, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ, HA, HB, HC, HD, HE, HF, HG, LA, LB, LC, LD, LE, LF,

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	88	95	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	77	82	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	77	82	parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	77	82	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	72	first strand
Strand 2	D	73	75	anti-parallel

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There are 3 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	123	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	176	179	anti-parallel

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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	182	184	anti-parallel

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There are 2 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	205	207	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	63	66	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	85	91	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	131	139	anti-parallel
Strand 3	E	172	179	anti-parallel
Strand 4	E	159	161	anti-parallel

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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	148	first strand
Strand 2	E	193	196	anti-parallel
Strand 3	E	201	203	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	85	86	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 2 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	441	456	parallel

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There are 2 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	308	anti-parallel

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There are 2 strands in GH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	316	323	first strand
Strand 2	G	284	308	anti-parallel

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There are 6 strands in GI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	377	first strand
Strand 2	G	382	385	anti-parallel
Strand 3	G	413	421	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	284	308	anti-parallel
Strand 6	G	316	323	anti-parallel

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There are 7 strands in GJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	377	first strand
Strand 2	G	382	385	anti-parallel
Strand 3	G	413	421	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	284	308	anti-parallel
Strand 6	G	441	456	parallel
Strand 7	G	468	470	parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	70	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	100	100	parallel

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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	100	first strand
Strand 2	H	88	96	parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	100	100	anti-parallel

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There are 2 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	143	first strand
Strand 2	H	174	183	anti-parallel

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There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	194	197	anti-parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	11	first strand
Strand 2	L	102	104	parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	62	64	anti-parallel

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There are 3 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	48	first strand
Strand 2	L	31	38	anti-parallel
Strand 3	L	85	92	anti-parallel

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There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	134	138	anti-parallel
Strand 3	L	172	177	anti-parallel
Strand 4	L	166	168	anti-parallel

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There are 2 strands in LE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	131	132	first strand
Strand 2	L	180	181	anti-parallel

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There are 4 strands in LF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	202	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYL