Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FYN entry

There are 2 chains in PDB entry 5FYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27GLU 381
B
 THR 27LYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5FYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 62Right-handed 310
Helix 2
2
A
74 77Right-handed 310
Helix 3
3
A
126 131Right-handed alpha
Helix 4
4
A
157 162Right-handed alpha
Helix 5
5
A
232 242Right-handed alpha
Helix 6
6
A
273 286Right-handed alpha
Helix 7
7
B
57 62Right-handed 310
Helix 8
8
B
74 77Right-handed 310
Helix 9
9
B
126 131Right-handed alpha
Helix 10
10
B
157 162Right-handed alpha
Helix 11
11
B
232 241Right-handed alpha
Helix 12
12
B
273 286Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 5FYN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, BH,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
172 180parallel
Strand 3
A
164 169anti-parallel
Strand 4
A
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
145 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
132 141anti-parallel
Strand 3
A
145 155anti-parallel
Strand 4
A
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
132 141anti-parallel
Strand 3
A
145 155anti-parallel
Strand 4
A
44 50anti-parallel
Strand 5
A
262 263anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 114first strand
Strand 2
A
79 89anti-parallel
Strand 3
A
346 348parallel
Strand 4
A
335 338anti-parallel
Strand 5
A
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
369 379anti-parallel
Strand 4
A
210 222anti-parallel
Strand 5
A
253 259anti-parallel
Strand 6
A
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 310first strand
Strand 2
A
321 327anti-parallel
Strand 3
A
352 354anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 34first strand
Strand 2
B
172 180parallel
Strand 3
B
164 169anti-parallel
Strand 4
B
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
145 155parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 141first strand
Strand 2
B
145 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
145 155anti-parallel
Strand 4
B
134 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
145 155anti-parallel
Strand 4
B
54 55parallel
Back to list of sheets
Back to top of page

There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 114first strand
Strand 2
B
79 89anti-parallel
Strand 3
B
346 348parallel
Strand 4
B
335 338anti-parallel
Strand 5
B
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
192 196anti-parallel
Strand 3
B
369 380anti-parallel
Strand 4
B
210 222anti-parallel
Strand 5
B
253 259anti-parallel
Strand 6
B
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 310first strand
Strand 2
B
321 328anti-parallel
Strand 3
B
352 354anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il