Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FYO entry

There are 2 chains in PDB entry 5FYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 298
B
 ALA 1PHE 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5FYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
37 43Right-handed 310
Helix 3
3
A
93 108Right-handed alpha
Helix 4
4
A
126 130Right-handed 310
Helix 5
5
A
132 145Right-handed alpha
Helix 6
6
A
150 159Right-handed alpha
Helix 7
7
A
161 163Right-handed 310
Helix 8
8
A
164 169Right-handed alpha
Helix 9
9
A
192 204Right-handed alpha
Helix 10
10
A
205 207Right-handed 310
Helix 11
11
A
218 223Right-handed alpha
Helix 12
12
A
229 234Right-handed alpha
Helix 13
13
A
244 247Right-handed 310
Helix 14
14
A
248 255Right-handed alpha
Helix 15
15
A
268 275Right-handed alpha
Helix 16
16
B
9 13Right-handed 310
Helix 17
17
B
37 43Right-handed 310
Helix 18
18
B
93 108Right-handed alpha
Helix 19
19
B
126 130Right-handed 310
Helix 20
20
B
132 145Right-handed alpha
Helix 21
21
B
150 159Right-handed alpha
Helix 22
22
B
161 163Right-handed 310
Helix 23
23
B
164 169Right-handed alpha
Helix 24
24
B
192 204Right-handed alpha
Helix 25
25
B
205 207Right-handed 310
Helix 26
26
B
218 223Right-handed alpha
Helix 27
27
B
229 234Right-handed alpha
Helix 28
28
B
244 247Right-handed 310
Helix 29
29
B
248 255Right-handed alpha
Helix 30
30
B
268 275Right-handed alpha
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There are 4 sheets in PDB entry 5FYO. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
258 262parallel
Strand 3
A
279 282parallel
Strand 4
A
20 25parallel
Strand 5
A
295 297anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
114 120parallel
Strand 4
A
184 189parallel
Strand 5
A
210 211parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 242first strand
Strand 2
B
258 262parallel
Strand 3
B
279 282parallel
Strand 4
B
20 25parallel
Strand 5
B
295 297anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
114 120parallel
Strand 4
B
184 189parallel
Strand 5
B
210 211parallel
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