Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FYQ entry

There are 6 chains in PDB entry 5FYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 56SER 356
B
 GLU 56SER 356
C
 GLU 1005GLU 1007
C
 LYS 1009VAL 1011
D
 GLY 1004GLU 1007
D
 LYS 1009VAL 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5FYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 73Right-handed alpha
Helix 2
2
A
85 88Right-handed 310
Helix 3
3
A
115 120Right-handed alpha
Helix 4
4
A
120 127Right-handed alpha
Helix 5
5
A
128 134Right-handed alpha
Helix 6
6
A
146 158Right-handed alpha
Helix 7
7
A
171 176Right-handed alpha
Helix 8
8
A
179 181Right-handed 310
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
240 254Right-handed alpha
Helix 11
11
A
268 275Right-handed 310
Helix 12
12
A
323 336Right-handed alpha
Helix 13
13
A
337 356Right-handed alpha
Helix 14
14
B
63 73Right-handed alpha
Helix 15
15
B
85 92Right-handed 310
Helix 16
16
B
114 119Right-handed 310
Helix 17
17
B
120 127Right-handed alpha
Helix 18
18
B
128 133Right-handed alpha
Helix 19
19
B
146 158Right-handed alpha
Helix 20
20
B
171 176Right-handed alpha
Helix 21
21
B
179 181Right-handed 310
Helix 22
22
B
241 254Right-handed alpha
Helix 23
23
B
268 276Right-handed 310
Helix 24
24
B
323 336Right-handed alpha
Helix 25
25
B
337 356Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5FYQ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
161 166parallel
Strand 3
A
79 83parallel
Strand 4
A
256 260parallel
Strand 5
A
282 286parallel
Strand 6
A
317 321parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
228 232anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
161 166parallel
Strand 3
B
79 83parallel
Strand 4
B
256 260parallel
Strand 5
B
282 286parallel
Strand 6
B
317 321parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 194first strand
Strand 2
B
229 232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il