Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FYR entry

There are 4 chains in PDB entry 5FYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	PHE 298
B	GLN 2	PHE 298
C	GLN 2	PHE 298
D	GLN 2	PHE 298

There are 61 helices in PDB entry 5FYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	13	Right-handed 310
Helix 2	2	A	37	43	Right-handed 310
Helix 3	3	A	93	108	Right-handed alpha
Helix 4	4	A	126	130	Right-handed 310
Helix 5	5	A	132	145	Right-handed alpha
Helix 6	6	A	150	159	Right-handed alpha
Helix 7	7	A	161	163	Right-handed 310
Helix 8	8	A	164	169	Right-handed alpha
Helix 9	9	A	192	204	Right-handed alpha
Helix 10	10	A	205	207	Right-handed 310
Helix 11	11	A	217	223	Right-handed alpha
Helix 12	12	A	229	234	Right-handed alpha
Helix 13	13	A	244	247	Right-handed 310
Helix 14	14	A	248	255	Right-handed alpha
Helix 15	15	A	268	275	Right-handed alpha
Helix 16	16	A	284	288	Right-handed 310
Helix 17	17	B	9	13	Right-handed 310
Helix 18	18	B	37	43	Right-handed 310
Helix 19	19	B	93	108	Right-handed alpha
Helix 20	20	B	126	130	Right-handed 310
Helix 21	21	B	132	145	Right-handed alpha
Helix 22	22	B	150	159	Right-handed alpha
Helix 23	23	B	161	163	Right-handed 310
Helix 24	24	B	164	169	Right-handed alpha
Helix 25	25	B	192	204	Right-handed alpha
Helix 26	26	B	205	207	Right-handed 310
Helix 27	27	B	218	223	Right-handed alpha
Helix 28	28	B	229	234	Right-handed alpha
Helix 29	29	B	244	247	Right-handed 310
Helix 30	30	B	248	255	Right-handed alpha
Helix 31	31	B	268	275	Right-handed alpha
Helix 32	32	B	284	288	Right-handed 310
Helix 33	33	C	9	15	Right-handed 310
Helix 34	34	C	37	43	Right-handed 310
Helix 35	35	C	93	108	Right-handed alpha
Helix 36	36	C	126	130	Right-handed 310
Helix 37	37	C	132	145	Right-handed alpha
Helix 38	38	C	150	159	Right-handed alpha
Helix 39	39	C	161	163	Right-handed 310
Helix 40	40	C	164	169	Right-handed alpha
Helix 41	41	C	192	204	Right-handed alpha
Helix 42	42	C	205	207	Right-handed 310
Helix 43	43	C	218	223	Right-handed alpha
Helix 44	44	C	229	235	Right-handed alpha
Helix 45	45	C	244	247	Right-handed 310
Helix 46	46	C	248	255	Right-handed alpha
Helix 47	47	C	268	275	Right-handed alpha
Helix 48	48	D	9	13	Right-handed 310
Helix 49	49	D	37	43	Right-handed 310
Helix 50	50	D	93	108	Right-handed alpha
Helix 51	51	D	132	145	Right-handed alpha
Helix 52	52	D	150	159	Right-handed alpha
Helix 53	53	D	161	163	Right-handed 310
Helix 54	54	D	164	169	Right-handed alpha
Helix 55	55	D	192	204	Right-handed alpha
Helix 56	56	D	205	207	Right-handed 310
Helix 57	57	D	218	223	Right-handed alpha
Helix 58	58	D	229	235	Right-handed alpha
Helix 59	59	D	244	247	Right-handed 310
Helix 60	60	D	248	255	Right-handed alpha
Helix 61	61	D	268	275	Right-handed alpha

There are 8 sheets in PDB entry 5FYR. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	258	262	parallel
Strand 3	A	279	282	parallel
Strand 4	A	20	25	parallel
Strand 5	A	295	297	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	114	120	parallel
Strand 4	A	184	189	parallel
Strand 5	A	210	211	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	258	262	parallel
Strand 3	B	279	282	parallel
Strand 4	B	20	25	parallel
Strand 5	B	295	297	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	114	120	parallel
Strand 4	B	184	189	parallel
Strand 5	B	210	211	parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	258	262	parallel
Strand 3	C	279	282	parallel
Strand 4	C	20	25	parallel
Strand 5	C	295	297	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	114	120	parallel
Strand 4	C	184	189	parallel
Strand 5	C	210	211	parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	258	262	parallel
Strand 3	D	279	282	parallel
Strand 4	D	20	25	parallel
Strand 5	D	295	297	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	46	52	anti-parallel
Strand 3	D	114	120	parallel
Strand 4	D	184	189	parallel
Strand 5	D	210	211	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FYR