Analysis of interatomic Contacts of Structural Units in PDB entry:
5FZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FZY entry

There are 2 chains in PDB entry 5FZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3VAL 187
B
 PRO 3VAL 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5FZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
90 95Right-handed alpha
Helix 3
3
A
152 156Right-handed 310
Helix 4
4
B
29 33Right-handed 310
Helix 5
5
B
90 95Right-handed alpha
Helix 6
6
B
152 156Right-handed 310
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There are 6 sheets in PDB entry 5FZY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
22 25anti-parallel
Strand 4
A
183 186anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
159 166anti-parallel
Strand 5
A
137 141anti-parallel
Strand 6
A
127 131anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
113 115anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
182 186anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
169 175anti-parallel
Strand 4
B
159 166anti-parallel
Strand 5
B
137 141anti-parallel
Strand 6
B
126 131anti-parallel
Strand 7
B
81 85anti-parallel
Strand 8
B
66 70anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 105first strand
Strand 2
B
110 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il