Analysis of interatomic Contacts of Structural Units in PDB entry:
5G06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5G06 entry

There are 11 chains in PDB entry 5G06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 303
B	ARG 3	ASN 242
C	LEU 7	ILE 394
D	MET 1	VAL 223
E	MET 1	LEU 265
F	GLN 4	GLN 248
G	MET 1	THR 236
H	SER 2	ASN 357
I	MET 1	PRO 291
J	ARG 9	LYS 1001
P	THR 1	GLU 95

There are 88 helices in PDB entry 5G06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	21	Right-handed alpha
Helix 2	2	A	98	113	Right-handed alpha
Helix 3	3	A	120	122	Right-handed 310
Helix 4	4	A	146	162	Right-handed alpha
Helix 5	5	A	205	211	Right-handed alpha
Helix 6	6	A	224	231	Right-handed alpha
Helix 7	7	A	257	291	Right-handed alpha
Helix 8	8	B	61	65	Right-handed 310
Helix 9	9	B	94	112	Right-handed alpha
Helix 10	10	B	134	151	Right-handed alpha
Helix 11	11	B	175	180	Right-handed alpha
Helix 12	12	B	209	239	Right-handed alpha
Helix 13	13	C	18	26	Right-handed alpha
Helix 14	14	C	26	37	Right-handed alpha
Helix 15	15	C	60	64	Right-handed 310
Helix 16	16	C	123	126	Right-handed 310
Helix 17	17	C	145	163	Right-handed alpha
Helix 18	18	C	167	170	Right-handed 310
Helix 19	19	C	226	239	Right-handed alpha
Helix 20	20	C	251	254	Right-handed 310
Helix 21	21	C	336	343	Right-handed alpha
Helix 22	22	C	370	392	Right-handed alpha
Helix 23	23	D	37	41	Right-handed 310
Helix 24	24	D	61	78	Right-handed alpha
Helix 25	25	D	79	83	Right-handed 310
Helix 26	26	D	105	124	Right-handed alpha
Helix 27	27	D	150	156	Right-handed alpha
Helix 28	28	D	187	218	Right-handed alpha
Helix 29	29	E	4	17	Right-handed alpha
Helix 30	30	E	89	103	Right-handed alpha
Helix 31	31	E	137	150	Right-handed alpha
Helix 32	32	E	202	207	Right-handed alpha
Helix 33	33	E	240	264	Right-handed alpha
Helix 34	34	F	106	125	Right-handed alpha
Helix 35	35	F	165	167	Right-handed 310
Helix 36	36	F	168	184	Right-handed alpha
Helix 37	37	F	222	245	Right-handed alpha
Helix 38	38	G	159	169	Right-handed alpha
Helix 39	39	G	173	182	Right-handed alpha
Helix 40	40	G	200	218	Right-handed alpha
Helix 41	41	G	221	234	Right-handed alpha
Helix 42	42	H	139	141	Right-handed 310
Helix 43	43	H	155	163	Right-handed alpha
Helix 44	44	H	237	241	Right-handed 310
Helix 45	45	H	290	310	Right-handed alpha
Helix 46	46	H	315	326	Right-handed alpha
Helix 47	47	H	327	329	Right-handed 310
Helix 48	48	H	331	335	Right-handed 310
Helix 49	49	H	337	356	Right-handed alpha
Helix 50	50	I	208	210	Right-handed 310
Helix 51	51	I	219	223	Right-handed 310
Helix 52	52	I	259	263	Right-handed alpha
Helix 53	53	J	54	59	Right-handed alpha
Helix 54	54	J	91	98	Right-handed alpha
Helix 55	55	J	98	104	Right-handed alpha
Helix 56	56	J	115	125	Right-handed alpha
Helix 57	57	J	125	138	Right-handed alpha
Helix 58	58	J	165	185	Right-handed alpha
Helix 59	59	J	186	189	Right-handed 310
Helix 60	60	J	198	208	Right-handed alpha
Helix 61	61	J	218	225	Right-handed alpha
Helix 62	62	J	260	270	Right-handed alpha
Helix 63	63	J	303	308	Right-handed alpha
Helix 64	64	J	366	381	Right-handed alpha
Helix 65	65	J	440	446	Right-handed alpha
Helix 66	66	J	476	488	Right-handed alpha
Helix 67	67	J	496	502	Right-handed alpha
Helix 68	68	J	520	525	Right-handed alpha
Helix 69	69	J	526	531	Right-handed 310
Helix 70	70	J	581	591	Right-handed alpha
Helix 71	71	J	605	611	Right-handed alpha
Helix 72	72	J	654	663	Right-handed alpha
Helix 73	73	J	668	693	Right-handed alpha
Helix 74	74	J	698	703	Right-handed alpha
Helix 75	75	J	721	746	Right-handed alpha
Helix 76	76	J	759	775	Right-handed alpha
Helix 77	77	J	782	792	Right-handed alpha
Helix 78	78	J	800	813	Right-handed alpha
Helix 79	79	J	825	829	Right-handed 310
Helix 80	80	J	848	862	Right-handed alpha
Helix 81	81	J	868	872	Right-handed 310
Helix 82	82	J	873	911	Right-handed alpha
Helix 83	83	J	940	944	Right-handed 310
Helix 84	84	P	2	20	Right-handed alpha
Helix 85	85	P	31	37	Right-handed alpha
Helix 86	86	P	53	64	Right-handed alpha
Helix 87	87	P	64	72	Right-handed alpha
Helix 88	88	P	76	95	Right-handed alpha

There are 44 sheets in PDB entry 5G06. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, CA, CB, CC, CD, CE, A, EA, EB, HA, HB, EC, ED, FA, GA, GB, GC, GD, HC, HD, HE, HF, IA, IB, IC, ID, JA, JB, JC, JD, JE, JF, JG, JH, JI, JJ,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	124	126	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	76	80	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	130	142	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	173	176	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	249	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	J	599	601	anti-parallel
Strand 3	J	594	595	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	47	57	anti-parallel
Strand 4	B	121	130	anti-parallel
Strand 5	B	71	78	parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	158	166	anti-parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	196	201	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	93	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	133	134	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	209	210	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	188	first strand
Strand 2	C	175	179	anti-parallel
Strand 3	C	242	248	parallel
Strand 4	C	276	283	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	269	271	anti-parallel

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There are 8 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	332	first strand
Strand 2	C	293	300	anti-parallel
Strand 3	C	345	351	anti-parallel
Strand 4	C	357	364	anti-parallel
Strand 5	D	173	186	anti-parallel
Strand 6	D	157	168	anti-parallel
Strand 7	D	130	139	anti-parallel
Strand 8	D	144	147	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	24	34	anti-parallel
Strand 4	D	87	96	anti-parallel
Strand 5	D	47	53	parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	82	first strand
Strand 2	E	120	132	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	117	first strand
Strand 2	E	120	132	parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	E	34	38	parallel
Strand 3	E	46	51	anti-parallel
Strand 4	E	57	68	anti-parallel
Strand 5	E	120	132	anti-parallel
Strand 6	E	115	117	parallel

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There are 6 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	9	first strand
Strand 2	E	34	38	parallel
Strand 3	E	46	51	anti-parallel
Strand 4	E	57	68	anti-parallel
Strand 5	E	120	132	anti-parallel
Strand 6	E	76	82	parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	157	first strand
Strand 2	E	172	179	anti-parallel

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There are 7 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	211	217	anti-parallel
Strand 4	E	222	229	anti-parallel
Strand 5	F	209	215	anti-parallel
Strand 6	F	199	204	anti-parallel
Strand 7	F	192	196	anti-parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	58	65	anti-parallel
Strand 3	F	69	81	anti-parallel
Strand 4	F	134	146	anti-parallel
Strand 5	F	92	98	parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	40	44	anti-parallel
Strand 3	G	55	58	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	34	36	anti-parallel

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There are 6 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	79	first strand
Strand 2	G	118	125	anti-parallel
Strand 3	G	132	135	anti-parallel
Strand 4	G	95	98	parallel
Strand 5	G	83	87	anti-parallel
Strand 6	G	71	79	first strand

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There are 3 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	193	197	anti-parallel
Strand 3	G	185	188	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	79	80	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	91	first strand
Strand 2	H	94	99	anti-parallel

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There are 6 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	119	first strand
Strand 2	H	168	176	anti-parallel
Strand 3	H	182	185	parallel
Strand 4	H	134	137	anti-parallel
Strand 5	H	123	127	anti-parallel
Strand 6	H	111	119	first strand

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There are 4 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	201	first strand
Strand 2	H	230	235	anti-parallel
Strand 3	H	221	225	anti-parallel
Strand 4	H	215	217	anti-parallel

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There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	62	67	anti-parallel
Strand 3	I	104	111	anti-parallel
Strand 4	I	29	37	parallel
Strand 5	I	21	26	anti-parallel

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There are 3 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	51	58	anti-parallel
Strand 3	I	41	48	anti-parallel

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There are 6 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	146	first strand
Strand 2	I	229	236	anti-parallel
Strand 3	I	244	246	parallel
Strand 4	I	202	206	anti-parallel
Strand 5	I	150	158	anti-parallel
Strand 6	I	138	146	anti-parallel

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There are 3 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	269	271	first strand
Strand 2	I	274	276	anti-parallel
Strand 3	I	283	285	anti-parallel

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There are 3 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	14	first strand
Strand 2	J	17	26	anti-parallel
Strand 3	J	33	42	anti-parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	78	79	first strand
Strand 2	J	84	90	parallel

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There are 5 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	148	first strand
Strand 2	J	110	114	parallel
Strand 3	J	84	90	parallel
Strand 4	J	191	196	parallel
Strand 5	J	214	217	parallel

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There are 4 strands in JD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	148	first strand
Strand 2	J	110	114	parallel
Strand 3	J	84	90	parallel
Strand 4	J	78	79	parallel

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There are 6 strands in JE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	274	280	first strand
Strand 2	J	315	320	anti-parallel
Strand 3	J	389	397	anti-parallel
Strand 4	J	299	302	parallel
Strand 5	J	287	291	anti-parallel
Strand 6	J	274	280	anti-parallel

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There are 6 strands in JF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	403	407	first strand
Strand 2	J	447	455	anti-parallel
Strand 3	J	464	473	anti-parallel
Strand 4	J	434	438	parallel
Strand 5	J	420	426	anti-parallel
Strand 6	J	403	407	anti-parallel

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There are 7 strands in JG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	532	533	first strand
Strand 2	J	636	653	parallel
Strand 3	J	619	630	anti-parallel
Strand 4	J	564	571	anti-parallel
Strand 5	J	552	558	anti-parallel
Strand 6	J	539	543	anti-parallel
Strand 7	J	532	533	first strand

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There are 2 strands in JH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	751	754	first strand
Strand 2	J	817	820	anti-parallel

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There are 5 strands in JI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	936	939	first strand
Strand 2	J	926	929	anti-parallel
Strand 3	J	913	921	anti-parallel
Strand 4	J	978	987	anti-parallel
Strand 5	J	994	1000	anti-parallel

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There are 3 strands in JJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	952	954	first strand
Strand 2	J	959	962	anti-parallel
Strand 3	J	971	974	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5G06

Analysis of interatomic Contacts of Structural Units in PDB entry:
5G06