Analysis of interatomic Contacts of Structural Units in PDB entry:
5G09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5G09 entry

There are 4 chains in PDB entry 5G09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 7	ALA 475
B	LEU 3	TRP 473
C	LYS 7	ALA 475
D	SER 2	GLN 474

There are 72 helices in PDB entry 5G09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	21	Right-handed alpha
Helix 2	2	A	56	61	Right-handed alpha
Helix 3	3	A	68	79	Right-handed alpha
Helix 4	4	A	91	104	Right-handed alpha
Helix 5	5	A	120	137	Right-handed alpha
Helix 6	6	A	152	158	Right-handed alpha
Helix 7	7	A	161	165	Right-handed 310
Helix 8	8	A	213	227	Right-handed alpha
Helix 9	9	A	250	263	Right-handed alpha
Helix 10	10	A	282	287	Right-handed 310
Helix 11	11	A	297	301	Right-handed 310
Helix 12	12	A	314	322	Right-handed alpha
Helix 13	13	A	334	351	Right-handed alpha
Helix 14	14	A	352	375	Right-handed alpha
Helix 15	15	A	404	408	Right-handed 310
Helix 16	16	A	413	416	Right-handed 310
Helix 17	17	A	417	427	Right-handed alpha
Helix 18	18	A	450	471	Right-handed alpha
Helix 19	19	B	9	21	Right-handed alpha
Helix 20	20	B	56	61	Right-handed alpha
Helix 21	21	B	68	79	Right-handed alpha
Helix 22	22	B	91	104	Right-handed alpha
Helix 23	23	B	120	137	Right-handed alpha
Helix 24	24	B	152	158	Right-handed alpha
Helix 25	25	B	161	165	Right-handed 310
Helix 26	26	B	213	227	Right-handed alpha
Helix 27	27	B	250	263	Right-handed alpha
Helix 28	28	B	282	288	Right-handed 310
Helix 29	29	B	297	301	Right-handed 310
Helix 30	30	B	314	322	Right-handed alpha
Helix 31	31	B	334	351	Right-handed alpha
Helix 32	32	B	352	375	Right-handed alpha
Helix 33	33	B	404	408	Right-handed 310
Helix 34	34	B	413	416	Right-handed 310
Helix 35	35	B	417	428	Right-handed alpha
Helix 36	36	B	450	471	Right-handed alpha
Helix 37	37	C	9	21	Right-handed alpha
Helix 38	38	C	56	61	Right-handed alpha
Helix 39	39	C	68	82	Right-handed alpha
Helix 40	40	C	91	104	Right-handed alpha
Helix 41	41	C	120	137	Right-handed alpha
Helix 42	42	C	152	158	Right-handed alpha
Helix 43	43	C	161	165	Right-handed 310
Helix 44	44	C	213	227	Right-handed alpha
Helix 45	45	C	250	263	Right-handed alpha
Helix 46	46	C	282	288	Right-handed 310
Helix 47	47	C	297	301	Right-handed 310
Helix 48	48	C	314	322	Right-handed alpha
Helix 49	49	C	334	351	Right-handed alpha
Helix 50	50	C	352	375	Right-handed alpha
Helix 51	51	C	404	408	Right-handed 310
Helix 52	52	C	413	416	Right-handed 310
Helix 53	53	C	417	428	Right-handed alpha
Helix 54	54	C	450	471	Right-handed alpha
Helix 55	55	D	9	21	Right-handed alpha
Helix 56	56	D	56	61	Right-handed alpha
Helix 57	57	D	68	79	Right-handed alpha
Helix 58	58	D	91	103	Right-handed alpha
Helix 59	59	D	120	137	Right-handed alpha
Helix 60	60	D	152	158	Right-handed alpha
Helix 61	61	D	161	165	Right-handed 310
Helix 62	62	D	213	227	Right-handed alpha
Helix 63	63	D	250	263	Right-handed alpha
Helix 64	64	D	282	288	Right-handed 310
Helix 65	65	D	297	301	Right-handed 310
Helix 66	66	D	314	322	Right-handed alpha
Helix 67	67	D	334	351	Right-handed alpha
Helix 68	68	D	352	375	Right-handed alpha
Helix 69	69	D	404	408	Right-handed 310
Helix 70	70	D	413	416	Right-handed 310
Helix 71	71	D	417	428	Right-handed alpha
Helix 72	72	D	450	470	Right-handed alpha

There are 16 sheets in PDB entry 5G09. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, CA, CB, CC, CD, CE, A, DB, C,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	43	45	anti-parallel
Strand 3	A	51	54	anti-parallel
Strand 4	A	431	432	parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	118	first strand
Strand 2	A	308	313	anti-parallel
Strand 3	A	293	296	anti-parallel
Strand 4	A	265	269	parallel
Strand 5	A	231	236	parallel
Strand 6	A	140	144	parallel
Strand 7	A	189	192	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	168	169	anti-parallel
Strand 3	B	324	325	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	B	168	169	anti-parallel
Strand 3	B	177	178	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	384	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	440	443	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	43	45	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	431	432	parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	118	first strand
Strand 2	B	308	313	anti-parallel
Strand 3	B	293	296	anti-parallel
Strand 4	B	265	269	parallel
Strand 5	B	231	236	parallel
Strand 6	B	140	144	parallel
Strand 7	B	189	192	parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	384	first strand
Strand 2	B	387	392	anti-parallel
Strand 3	B	440	443	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	43	45	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	431	432	parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	118	first strand
Strand 2	C	308	313	anti-parallel
Strand 3	C	293	296	anti-parallel
Strand 4	C	265	269	parallel
Strand 5	C	231	236	parallel
Strand 6	C	140	144	parallel
Strand 7	C	189	192	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	D	324	325	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	D	168	169	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	384	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	C	440	443	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	43	45	anti-parallel
Strand 3	D	51	54	anti-parallel
Strand 4	D	431	432	parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	118	first strand
Strand 2	D	308	313	anti-parallel
Strand 3	D	293	296	anti-parallel
Strand 4	D	265	269	parallel
Strand 5	D	231	236	parallel
Strand 6	D	140	144	parallel
Strand 7	D	189	192	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	384	first strand
Strand 2	D	387	392	anti-parallel
Strand 3	D	440	443	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5G09

Analysis of interatomic Contacts of Structural Units in PDB entry:
5G09