Analysis of interatomic Contacts of Structural Units in PDB entry:
5G0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G0I entry

There are 2 chains in PDB entry 5G0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58ILE 801
B
 LYS 59LEU 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 5G0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 73Right-handed 310
Helix 2
2
A
86 99Right-handed alpha
Helix 3
3
A
101 105Right-handed 310
Helix 4
4
A
114 119Right-handed alpha
Helix 5
5
A
123 133Right-handed alpha
Helix 6
6
A
134 136Right-handed 310
Helix 7
7
A
137 146Right-handed alpha
Helix 8
8
A
156 177Right-handed alpha
Helix 9
9
A
206 220Right-handed alpha
Helix 10
10
A
234 242Right-handed alpha
Helix 11
11
A
256 259Right-handed 310
Helix 12
12
A
264 268Right-handed 310
Helix 13
13
A
274 278Right-handed 310
Helix 14
14
A
292 303Right-handed alpha
Helix 15
15
A
303 312Right-handed alpha
Helix 16
16
A
338 349Right-handed alpha
Helix 17
17
A
364 380Right-handed alpha
Helix 18
18
A
394 409Right-handed alpha
Helix 19
19
A
410 417Right-handed 310
Helix 20
20
A
450 455Right-handed 310
Helix 21
21
A
467 480Right-handed alpha
Helix 22
22
A
482 486Right-handed 310
Helix 23
23
A
495 500Right-handed alpha
Helix 24
24
A
504 514Right-handed alpha
Helix 25
25
A
515 517Right-handed 310
Helix 26
26
A
518 528Right-handed alpha
Helix 27
27
A
537 558Right-handed alpha
Helix 28
28
A
587 599Right-handed alpha
Helix 29
29
A
616 624Right-handed alpha
Helix 30
30
A
638 641Right-handed 310
Helix 31
31
A
646 650Right-handed 310
Helix 32
32
A
656 660Right-handed 310
Helix 33
33
A
674 685Right-handed alpha
Helix 34
34
A
685 694Right-handed alpha
Helix 35
35
A
718 730Right-handed alpha
Helix 36
36
A
731 735Right-handed 310
Helix 37
37
A
746 762Right-handed alpha
Helix 38
38
A
776 791Right-handed alpha
Helix 39
39
A
794 798Right-handed 310
Helix 40
40
B
68 73Right-handed 310
Helix 41
41
B
86 99Right-handed alpha
Helix 42
42
B
101 105Right-handed 310
Helix 43
43
B
114 119Right-handed alpha
Helix 44
44
B
123 133Right-handed alpha
Helix 45
45
B
134 136Right-handed 310
Helix 46
46
B
137 146Right-handed alpha
Helix 47
47
B
156 177Right-handed alpha
Helix 48
48
B
206 219Right-handed alpha
Helix 49
49
B
234 242Right-handed alpha
Helix 50
50
B
256 259Right-handed 310
Helix 51
51
B
264 268Right-handed 310
Helix 52
52
B
274 278Right-handed 310
Helix 53
53
B
292 303Right-handed alpha
Helix 54
54
B
303 312Right-handed alpha
Helix 55
55
B
338 349Right-handed alpha
Helix 56
56
B
350 353Right-handed 310
Helix 57
57
B
364 381Right-handed alpha
Helix 58
58
B
394 409Right-handed alpha
Helix 59
59
B
410 418Right-handed 310
Helix 60
60
B
450 455Right-handed 310
Helix 61
61
B
467 480Right-handed alpha
Helix 62
62
B
482 486Right-handed 310
Helix 63
63
B
495 500Right-handed alpha
Helix 64
64
B
504 514Right-handed alpha
Helix 65
65
B
515 517Right-handed 310
Helix 66
66
B
518 528Right-handed alpha
Helix 67
67
B
537 558Right-handed alpha
Helix 68
68
B
587 599Right-handed alpha
Helix 69
69
B
616 624Right-handed alpha
Helix 70
70
B
638 641Right-handed 310
Helix 71
71
B
646 650Right-handed 310
Helix 72
72
B
656 660Right-handed 310
Helix 73
73
B
674 685Right-handed alpha
Helix 74
74
B
685 694Right-handed alpha
Helix 75
75
B
718 730Right-handed alpha
Helix 76
76
B
731 735Right-handed 310
Helix 77
77
B
746 762Right-handed alpha
Helix 78
78
B
776 791Right-handed alpha
Helix 79
79
B
794 798Right-handed 310
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There are 4 sheets in PDB entry 5G0I. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
63 66parallel
Strand 3
A
182 185parallel
Strand 4
A
355 359parallel
Strand 5
A
315 320parallel
Strand 6
A
224 228parallel
Strand 7
A
247 254parallel
Strand 8
A
281 286parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
444 448parallel
Strand 3
A
563 567parallel
Strand 4
A
737 741parallel
Strand 5
A
697 702parallel
Strand 6
A
606 610parallel
Strand 7
A
629 636parallel
Strand 8
A
663 668parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
63 66parallel
Strand 3
B
182 185parallel
Strand 4
B
355 359parallel
Strand 5
B
315 320parallel
Strand 6
B
224 228parallel
Strand 7
B
247 254parallel
Strand 8
B
281 286parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 488first strand
Strand 2
B
444 448parallel
Strand 3
B
563 567parallel
Strand 4
B
737 741parallel
Strand 5
B
697 702parallel
Strand 6
B
606 610parallel
Strand 7
B
629 636parallel
Strand 8
B
663 668parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il