Analysis of interatomic Contacts of Structural Units in PDB entry:
5G0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G0M entry

There is 1 chain in PDB entry 5G0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19ALA 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5G0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 51Right-handed 310
Helix 2
2
A
59 70Right-handed alpha
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
96 100Right-handed 310
Helix 5
5
A
117 132Right-handed alpha
Helix 6
6
A
145 161Right-handed alpha
Helix 7
7
A
173 177Right-handed 310
Helix 8
8
A
188 207Right-handed alpha
Helix 9
9
A
223 232Right-handed alpha
Helix 10
10
A
233 235Right-handed 310
Helix 11
11
A
254 259Right-handed alpha
Helix 12
12
A
262 280Right-handed alpha
Helix 13
13
A
302 320Right-handed alpha
Helix 14
14
A
348 361Right-handed alpha
Helix 15
15
A
440 444Right-handed 310
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There are 7 sheets in PDB entry 5G0M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
416 422anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
416 422parallel
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There are 10 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
459 464anti-parallel
Strand 3
A
404 409anti-parallel
Strand 4
A
20 35parallel
Strand 5
A
363 371anti-parallel
Strand 6
A
379 386anti-parallel
Strand 7
A
391 397anti-parallel
Strand 8
A
468 474anti-parallel
Strand 9
A
416 422anti-parallel
Strand 10
A
433 434anti-parallel
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There are 10 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
459 464anti-parallel
Strand 3
A
404 409anti-parallel
Strand 4
A
20 35parallel
Strand 5
A
363 371anti-parallel
Strand 6
A
379 386anti-parallel
Strand 7
A
391 397anti-parallel
Strand 8
A
468 474anti-parallel
Strand 9
A
416 422anti-parallel
Strand 10
A
451 452parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
134 139parallel
Strand 3
A
74 78parallel
Strand 4
A
41 45parallel
Strand 5
A
324 328parallel
Strand 6
A
283 289parallel
Strand 7
A
237 243parallel
Strand 8
A
213 217parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
114 116parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
344 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il