Analysis of interatomic Contacts of Structural Units in PDB entry:
5G0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G0T entry

There are 4 chains in PDB entry 5G0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 269
B
 GLY 3LEU 269
C
 THR 2LEU 269
D
 GLY 3LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5G0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 32Right-handed alpha
Helix 2
2
A
43 52Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
107 111Right-handed 310
Helix 5
5
A
112 124Right-handed alpha
Helix 6
6
A
124 135Right-handed alpha
Helix 7
7
A
158 181Right-handed alpha
Helix 8
8
A
208 226Right-handed alpha
Helix 9
9
A
235 247Right-handed alpha
Helix 10
10
A
263 266Right-handed 310
Helix 11
11
B
20 32Right-handed alpha
Helix 12
12
B
43 52Right-handed alpha
Helix 13
13
B
67 83Right-handed alpha
Helix 14
14
B
99 103Right-handed 310
Helix 15
15
B
107 111Right-handed 310
Helix 16
16
B
112 124Right-handed alpha
Helix 17
17
B
124 135Right-handed alpha
Helix 18
18
B
158 181Right-handed alpha
Helix 19
19
B
208 226Right-handed alpha
Helix 20
20
B
235 247Right-handed alpha
Helix 21
21
B
263 266Right-handed 310
Helix 22
22
C
20 32Right-handed alpha
Helix 23
23
C
43 52Right-handed alpha
Helix 24
24
C
67 83Right-handed alpha
Helix 25
25
C
107 111Right-handed 310
Helix 26
26
C
112 124Right-handed alpha
Helix 27
27
C
124 135Right-handed alpha
Helix 28
28
C
158 181Right-handed alpha
Helix 29
29
C
215 226Right-handed alpha
Helix 30
30
C
235 247Right-handed alpha
Helix 31
31
C
263 266Right-handed 310
Helix 32
32
D
20 32Right-handed alpha
Helix 33
33
D
46 52Right-handed alpha
Helix 34
34
D
67 83Right-handed alpha
Helix 35
35
D
107 111Right-handed 310
Helix 36
36
D
112 124Right-handed alpha
Helix 37
37
D
124 135Right-handed alpha
Helix 38
38
D
158 181Right-handed alpha
Helix 39
39
D
208 226Right-handed alpha
Helix 40
40
D
235 247Right-handed alpha
Helix 41
41
D
263 266Right-handed 310
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There are 4 sheets in PDB entry 5G0T. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
35 40parallel
Strand 3
A
9 13parallel
Strand 4
A
88 93parallel
Strand 5
A
138 148parallel
Strand 6
A
185 191parallel
Strand 7
A
256 260parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
35 40parallel
Strand 3
B
9 13parallel
Strand 4
B
88 93parallel
Strand 5
B
138 148parallel
Strand 6
B
185 191parallel
Strand 7
B
256 260parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
35 40parallel
Strand 3
C
9 13parallel
Strand 4
C
88 93parallel
Strand 5
C
138 148parallel
Strand 6
C
185 191parallel
Strand 7
C
256 260parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
35 40parallel
Strand 3
D
9 13parallel
Strand 4
D
88 93parallel
Strand 5
D
138 148parallel
Strand 6
D
185 191parallel
Strand 7
D
256 260parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il