Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1C entry

There are 2 chains in PDB entry 5G1C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 369
B
 HIS 0ARG 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5G1C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed 310
Helix 2
2
A
40 53Right-handed alpha
Helix 3
3
A
54 59Right-handed 310
Helix 4
4
A
68 74Right-handed alpha
Helix 5
5
A
77 90Right-handed alpha
Helix 6
6
A
107 127Right-handed alpha
Helix 7
7
A
156 168Right-handed alpha
Helix 8
8
A
184 191Right-handed alpha
Helix 9
9
A
220 224Right-handed 310
Helix 10
10
A
237 248Right-handed alpha
Helix 11
11
A
248 257Right-handed alpha
Helix 12
12
A
281 300Right-handed alpha
Helix 13
13
A
316 330Right-handed alpha
Helix 14
14
A
338 344Right-handed alpha
Helix 15
15
A
351 360Right-handed alpha
Helix 16
16
A
361 368Right-handed 310
Helix 17
17
B
8 14Right-handed 310
Helix 18
18
B
40 53Right-handed alpha
Helix 19
19
B
54 59Right-handed 310
Helix 20
20
B
68 74Right-handed alpha
Helix 21
21
B
77 90Right-handed alpha
Helix 22
22
B
106 127Right-handed alpha
Helix 23
23
B
156 168Right-handed alpha
Helix 24
24
B
184 191Right-handed alpha
Helix 25
25
B
220 224Right-handed 310
Helix 26
26
B
237 248Right-handed alpha
Helix 27
27
B
248 257Right-handed alpha
Helix 28
28
B
281 300Right-handed alpha
Helix 29
29
B
316 330Right-handed alpha
Helix 30
30
B
338 344Right-handed alpha
Helix 31
31
B
351 360Right-handed alpha
Helix 32
32
B
361 368Right-handed 310
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There are 4 sheets in PDB entry 5G1C. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
3 6parallel
Strand 3
A
132 135parallel
Strand 4
A
304 308parallel
Strand 5
A
261 265parallel
Strand 6
A
174 178parallel
Strand 7
A
197 204parallel
Strand 8
A
227 232parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
102 103anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
3 6parallel
Strand 3
B
132 135parallel
Strand 4
B
304 308parallel
Strand 5
B
261 265parallel
Strand 6
B
174 178parallel
Strand 7
B
197 204parallel
Strand 8
B
227 232parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
102 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il