Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1D entry

There are 4 chains in PDB entry 5G1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 112ILE 281
B
 GLN 112ILE 281
C
 ALA 1ALA 8
D
 ALA 1ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5G1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
147 152Right-handed alpha
Helix 2
2
A
172 183Right-handed alpha
Helix 3
3
A
227 232Right-handed alpha
Helix 4
4
A
252 262Right-handed alpha
Helix 5
5
A
274 281Right-handed alpha
Helix 6
6
B
147 152Right-handed alpha
Helix 7
7
B
172 181Right-handed alpha
Helix 8
8
B
227 233Right-handed alpha
Helix 9
9
B
252 263Right-handed alpha
Helix 10
10
B
274 280Right-handed alpha
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There are 10 sheets in PDB entry 5G1D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
166 167anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
137 143anti-parallel
Strand 5
A
129 134anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
159 163anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 204first strand
Strand 2
A
266 273anti-parallel
Strand 3
A
238 243anti-parallel
Strand 4
A
246 247anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223first strand
Strand 2
A
213 216anti-parallel
Strand 3
D
6 7anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
159 163anti-parallel
Strand 4
B
166 167anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
159 163anti-parallel
Strand 4
B
137 143anti-parallel
Strand 5
B
129 134anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
159 163anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 204first strand
Strand 2
B
266 273anti-parallel
Strand 3
B
238 243anti-parallel
Strand 4
B
246 247anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 223first strand
Strand 2
B
213 216anti-parallel
Strand 3
C
6 7anti-parallel
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