Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1E entry

There are 2 chains in PDB entry 5G1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 113ILE 281
B
 GLN 112ILE 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5G1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
147 152Right-handed alpha
Helix 2
2
A
172 182Right-handed alpha
Helix 3
3
A
227 232Right-handed alpha
Helix 4
4
A
252 262Right-handed alpha
Helix 5
5
A
274 281Right-handed alpha
Helix 6
6
B
147 152Right-handed alpha
Helix 7
7
B
172 183Right-handed alpha
Helix 8
8
B
227 232Right-handed alpha
Helix 9
9
B
252 262Right-handed alpha
Helix 10
10
B
274 281Right-handed alpha
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There are 7 sheets in PDB entry 5G1E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
166 167anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
137 143anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 204first strand
Strand 2
A
266 273anti-parallel
Strand 3
A
238 243anti-parallel
Strand 4
A
219 223anti-parallel
Strand 5
A
213 216anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
159 163anti-parallel
Strand 4
B
166 167anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
159 163anti-parallel
Strand 4
B
137 143anti-parallel
Strand 5
B
129 134anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
159 163anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 204first strand
Strand 2
B
266 273anti-parallel
Strand 3
B
238 242anti-parallel
Strand 4
B
219 223anti-parallel
Strand 5
B
213 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il