Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1O entry

There are 6 chains in PDB entry 5G1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1917PHE 2225
B
 SER 1915PHE 2225
C
 HIS 1919PHE 2225
D
 LEU 1918PHE 2225
E
 SER 1915PHE 2225
F
 PRO 1916PHE 2225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 5G1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1928 1932Right-handed 310
Helix 2
2
A
1933 1953Right-handed alpha
Helix 3
3
A
1973 1987Right-handed alpha
Helix 4
4
A
2006 2018Right-handed alpha
Helix 5
5
A
2029 2037Right-handed alpha
Helix 6
6
A
2052 2068Right-handed alpha
Helix 7
7
A
2084 2094Right-handed alpha
Helix 8
8
A
2095 2097Right-handed 310
Helix 9
9
A
2112 2122Right-handed alpha
Helix 10
10
A
2131 2136Right-handed alpha
Helix 11
11
A
2137 2139Right-handed 310
Helix 12
12
A
2168 2173Right-handed alpha
Helix 13
13
A
2204 2222Right-handed alpha
Helix 14
14
B
1928 1932Right-handed 310
Helix 15
15
B
1933 1953Right-handed alpha
Helix 16
16
B
1973 1987Right-handed alpha
Helix 17
17
B
2006 2016Right-handed alpha
Helix 18
18
B
2029 2037Right-handed alpha
Helix 19
19
B
2052 2068Right-handed alpha
Helix 20
20
B
2084 2095Right-handed alpha
Helix 21
21
B
2106 2110Right-handed 310
Helix 22
22
B
2112 2122Right-handed alpha
Helix 23
23
B
2131 2136Right-handed alpha
Helix 24
24
B
2155 2162Right-handed alpha
Helix 25
25
B
2163 2166Right-handed 310
Helix 26
26
B
2170 2175Right-handed 310
Helix 27
27
B
2192 2196Right-handed 310
Helix 28
28
B
2202 2222Right-handed alpha
Helix 29
29
C
1928 1932Right-handed 310
Helix 30
30
C
1933 1954Right-handed alpha
Helix 31
31
C
1973 1987Right-handed alpha
Helix 32
32
C
2006 2018Right-handed alpha
Helix 33
33
C
2029 2037Right-handed alpha
Helix 34
34
C
2052 2068Right-handed alpha
Helix 35
35
C
2084 2095Right-handed alpha
Helix 36
36
C
2112 2122Right-handed alpha
Helix 37
37
C
2131 2136Right-handed alpha
Helix 38
38
C
2148 2152Right-handed 310
Helix 39
39
C
2170 2175Right-handed alpha
Helix 40
40
C
2192 2198Right-handed 310
Helix 41
41
C
2202 2222Right-handed alpha
Helix 42
42
D
1928 1932Right-handed 310
Helix 43
43
D
1933 1953Right-handed alpha
Helix 44
44
D
1973 1986Right-handed alpha
Helix 45
45
D
2006 2015Right-handed alpha
Helix 46
46
D
2029 2036Right-handed alpha
Helix 47
47
D
2052 2068Right-handed alpha
Helix 48
48
D
2086 2094Right-handed alpha
Helix 49
49
D
2095 2097Right-handed 310
Helix 50
50
D
2106 2110Right-handed 310
Helix 51
51
D
2112 2123Right-handed alpha
Helix 52
52
D
2131 2136Right-handed alpha
Helix 53
53
D
2162 2166Right-handed 310
Helix 54
54
D
2168 2173Right-handed alpha
Helix 55
55
D
2192 2196Right-handed 310
Helix 56
56
D
2202 2222Right-handed alpha
Helix 57
57
E
1928 1932Right-handed 310
Helix 58
58
E
1933 1954Right-handed alpha
Helix 59
59
E
1973 1987Right-handed alpha
Helix 60
60
E
2006 2018Right-handed alpha
Helix 61
61
E
2029 2037Right-handed alpha
Helix 62
62
E
2052 2068Right-handed alpha
Helix 63
63
E
2084 2095Right-handed alpha
Helix 64
64
E
2112 2122Right-handed alpha
Helix 65
65
E
2131 2136Right-handed alpha
Helix 66
66
E
2137 2139Right-handed 310
Helix 67
67
E
2148 2152Right-handed 310
Helix 68
68
E
2162 2166Right-handed 310
Helix 69
69
E
2170 2175Right-handed 310
Helix 70
70
E
2192 2196Right-handed 310
Helix 71
71
E
2202 2222Right-handed alpha
Helix 72
72
F
1928 1932Right-handed 310
Helix 73
73
F
1933 1953Right-handed alpha
Helix 74
74
F
1973 1987Right-handed alpha
Helix 75
75
F
2006 2015Right-handed alpha
Helix 76
76
F
2029 2037Right-handed alpha
Helix 77
77
F
2052 2068Right-handed alpha
Helix 78
78
F
2084 2094Right-handed alpha
Helix 79
79
F
2095 2097Right-handed 310
Helix 80
80
F
2106 2110Right-handed 310
Helix 81
81
F
2112 2122Right-handed alpha
Helix 82
82
F
2131 2136Right-handed alpha
Helix 83
83
F
2148 2152Right-handed 310
Helix 84
84
F
2154 2162Right-handed alpha
Helix 85
85
F
2163 2165Right-handed 310
Helix 86
86
F
2168 2173Right-handed alpha
Helix 87
87
F
2192 2198Right-handed 310
Helix 88
88
F
2202 2222Right-handed alpha
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There are 12 sheets in PDB entry 5G1O. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1990 1994first strand
Strand 2
A
1964 1969parallel
Strand 3
A
2020 2024parallel
Strand 4
A
2042 2044parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2125 2129first strand
Strand 2
A
2100 2104parallel
Strand 3
A
2074 2078parallel
Strand 4
A
2141 2144parallel
Strand 5
A
2180 2182parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1990 1993first strand
Strand 2
B
1964 1969parallel
Strand 3
B
2020 2024parallel
Strand 4
B
2042 2044parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2128 2129first strand
Strand 2
B
2099 2104parallel
Strand 3
B
2073 2078parallel
Strand 4
B
2141 2144parallel
Strand 5
B
2180 2182parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1990 1994first strand
Strand 2
C
1964 1969parallel
Strand 3
C
2020 2024parallel
Strand 4
C
2042 2044parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2126 2129first strand
Strand 2
C
2100 2104parallel
Strand 3
C
2074 2078parallel
Strand 4
C
2141 2143parallel
Strand 5
C
2180 2182parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1990 1993first strand
Strand 2
D
1964 1969parallel
Strand 3
D
2020 2024parallel
Strand 4
D
2042 2044parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2125 2129first strand
Strand 2
D
2099 2104parallel
Strand 3
D
2073 2078parallel
Strand 4
D
2141 2144parallel
Strand 5
D
2180 2182parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1990 1993first strand
Strand 2
E
1964 1969parallel
Strand 3
E
2020 2024parallel
Strand 4
E
2042 2044parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2125 2129first strand
Strand 2
E
2099 2104parallel
Strand 3
E
2073 2078parallel
Strand 4
E
2141 2143parallel
Strand 5
E
2180 2182parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1990 1992first strand
Strand 2
F
1964 1969parallel
Strand 3
F
2020 2024parallel
Strand 4
F
2042 2046parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2125 2129first strand
Strand 2
F
2100 2104parallel
Strand 3
F
2074 2078parallel
Strand 4
F
2141 2144parallel
Strand 5
F
2180 2182parallel
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