Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1P entry

There are 6 chains in PDB entry 5G1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1922PHE 2225
B
 SER 1920PHE 2225
C
 SER 1920PHE 2225
D
 LEU 1921PHE 2225
E
 HIS 1919PHE 2225
F
 SER 1915PHE 2225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 5G1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1928 1932Right-handed 310
Helix 2
2
A
1933 1954Right-handed alpha
Helix 3
3
A
1975 1987Right-handed alpha
Helix 4
4
A
1995 1999Right-handed 310
Helix 5
5
A
1999 2003Right-handed 310
Helix 6
6
A
2006 2018Right-handed alpha
Helix 7
7
A
2029 2037Right-handed alpha
Helix 8
8
A
2052 2068Right-handed alpha
Helix 9
9
A
2086 2094Right-handed alpha
Helix 10
10
A
2095 2097Right-handed 310
Helix 11
11
A
2112 2121Right-handed alpha
Helix 12
12
A
2131 2136Right-handed alpha
Helix 13
13
A
2171 2175Right-handed 310
Helix 14
14
A
2192 2196Right-handed 310
Helix 15
15
A
2202 2222Right-handed alpha
Helix 16
16
B
1928 1932Right-handed 310
Helix 17
17
B
1933 1953Right-handed alpha
Helix 18
18
B
1975 1987Right-handed alpha
Helix 19
19
B
1995 1999Right-handed 310
Helix 20
20
B
1999 2003Right-handed 310
Helix 21
21
B
2006 2018Right-handed alpha
Helix 22
22
B
2029 2037Right-handed alpha
Helix 23
23
B
2052 2068Right-handed alpha
Helix 24
24
B
2086 2094Right-handed alpha
Helix 25
25
B
2095 2097Right-handed 310
Helix 26
26
B
2115 2122Right-handed alpha
Helix 27
27
B
2131 2136Right-handed alpha
Helix 28
28
B
2171 2175Right-handed 310
Helix 29
29
B
2192 2196Right-handed 310
Helix 30
30
B
2202 2222Right-handed alpha
Helix 31
31
C
1928 1932Right-handed 310
Helix 32
32
C
1933 1954Right-handed alpha
Helix 33
33
C
1975 1987Right-handed alpha
Helix 34
34
C
1995 1999Right-handed 310
Helix 35
35
C
1999 2003Right-handed 310
Helix 36
36
C
2006 2018Right-handed alpha
Helix 37
37
C
2029 2037Right-handed alpha
Helix 38
38
C
2052 2068Right-handed alpha
Helix 39
39
C
2086 2094Right-handed alpha
Helix 40
40
C
2095 2097Right-handed 310
Helix 41
41
C
2119 2123Right-handed 310
Helix 42
42
C
2131 2136Right-handed alpha
Helix 43
43
C
2137 2139Right-handed 310
Helix 44
44
C
2171 2175Right-handed 310
Helix 45
45
C
2192 2196Right-handed 310
Helix 46
46
C
2202 2222Right-handed alpha
Helix 47
47
D
1928 1932Right-handed 310
Helix 48
48
D
1933 1953Right-handed alpha
Helix 49
49
D
1975 1987Right-handed alpha
Helix 50
50
D
1995 1999Right-handed 310
Helix 51
51
D
2006 2018Right-handed alpha
Helix 52
52
D
2029 2037Right-handed alpha
Helix 53
53
D
2052 2068Right-handed alpha
Helix 54
54
D
2086 2094Right-handed alpha
Helix 55
55
D
2095 2097Right-handed 310
Helix 56
56
D
2115 2120Right-handed alpha
Helix 57
57
D
2131 2136Right-handed alpha
Helix 58
58
D
2137 2139Right-handed 310
Helix 59
59
D
2159 2164Right-handed alpha
Helix 60
60
D
2171 2175Right-handed 310
Helix 61
61
D
2192 2196Right-handed 310
Helix 62
62
D
2202 2222Right-handed alpha
Helix 63
63
E
1928 1932Right-handed 310
Helix 64
64
E
1933 1954Right-handed alpha
Helix 65
65
E
1975 1987Right-handed alpha
Helix 66
66
E
1995 1999Right-handed 310
Helix 67
67
E
1999 2003Right-handed 310
Helix 68
68
E
2006 2018Right-handed alpha
Helix 69
69
E
2029 2037Right-handed alpha
Helix 70
70
E
2052 2068Right-handed alpha
Helix 71
71
E
2086 2094Right-handed alpha
Helix 72
72
E
2095 2097Right-handed 310
Helix 73
73
E
2115 2122Right-handed alpha
Helix 74
74
E
2131 2136Right-handed alpha
Helix 75
75
E
2137 2139Right-handed 310
Helix 76
76
E
2158 2165Right-handed alpha
Helix 77
77
E
2171 2175Right-handed 310
Helix 78
78
E
2202 2222Right-handed alpha
Helix 79
79
F
1928 1932Right-handed 310
Helix 80
80
F
1933 1954Right-handed alpha
Helix 81
81
F
1975 1987Right-handed alpha
Helix 82
82
F
1995 1999Right-handed 310
Helix 83
83
F
1999 2004Right-handed 310
Helix 84
84
F
2006 2018Right-handed alpha
Helix 85
85
F
2029 2037Right-handed alpha
Helix 86
86
F
2052 2068Right-handed alpha
Helix 87
87
F
2086 2094Right-handed alpha
Helix 88
88
F
2095 2097Right-handed 310
Helix 89
89
F
2115 2122Right-handed alpha
Helix 90
90
F
2131 2136Right-handed alpha
Helix 91
91
F
2137 2139Right-handed 310
Helix 92
92
F
2158 2165Right-handed alpha
Helix 93
93
F
2171 2175Right-handed 310
Helix 94
94
F
2192 2196Right-handed 310
Helix 95
95
F
2202 2222Right-handed alpha
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There are 12 sheets in PDB entry 5G1P. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1990 1994first strand
Strand 2
A
1964 1969parallel
Strand 3
A
2020 2024parallel
Strand 4
A
2043 2044parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2126 2129first strand
Strand 2
A
2100 2104parallel
Strand 3
A
2074 2078parallel
Strand 4
A
2141 2143parallel
Strand 5
A
2180 2182parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1990 1994first strand
Strand 2
B
1964 1969parallel
Strand 3
B
2020 2024parallel
Strand 4
B
2043 2046parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2126 2129first strand
Strand 2
B
2100 2104parallel
Strand 3
B
2074 2078parallel
Strand 4
B
2141 2143parallel
Strand 5
B
2180 2182parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1990 1994first strand
Strand 2
C
1964 1969parallel
Strand 3
C
2020 2024parallel
Strand 4
C
2043 2044parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2126 2129first strand
Strand 2
C
2100 2104parallel
Strand 3
C
2074 2078parallel
Strand 4
C
2141 2143parallel
Strand 5
C
2180 2182parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1990 1994first strand
Strand 2
D
1964 1969parallel
Strand 3
D
2020 2024parallel
Strand 4
D
2043 2044parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2126 2129first strand
Strand 2
D
2100 2104parallel
Strand 3
D
2074 2078parallel
Strand 4
D
2141 2143parallel
Strand 5
D
2180 2182parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1990 1994first strand
Strand 2
E
1964 1969parallel
Strand 3
E
2020 2024parallel
Strand 4
E
2043 2044parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2126 2129first strand
Strand 2
E
2100 2104parallel
Strand 3
E
2074 2078parallel
Strand 4
E
2141 2143parallel
Strand 5
E
2180 2182parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1990 1992first strand
Strand 2
F
1964 1969parallel
Strand 3
F
2020 2024parallel
Strand 4
F
2043 2044parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2126 2128first strand
Strand 2
F
2100 2104parallel
Strand 3
F
2074 2078parallel
Strand 4
F
2141 2143parallel
Strand 5
F
2180 2182parallel
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