Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5G1Q entry

There are 7 chains in PDB entry 5G1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	SER 195
B	LEU 6	SER 195
C	LEU 6	SER 195
D	LEU 6	SER 195
E	VAL 7	ARG 196
F	LEU 6	GLU 194
G	ASN 5	ARG 196

There are 51 helices in PDB entry 5G1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	29	Right-handed alpha
Helix 2	2	A	40	58	Right-handed alpha
Helix 3	3	A	73	87	Right-handed alpha
Helix 4	4	A	101	109	Right-handed alpha
Helix 5	5	A	148	162	Right-handed alpha
Helix 6	6	A	164	173	Right-handed alpha
Helix 7	7	A	180	186	Right-handed alpha
Helix 8	8	B	23	30	Right-handed alpha
Helix 9	9	B	40	58	Right-handed alpha
Helix 10	10	B	73	87	Right-handed alpha
Helix 11	11	B	101	109	Right-handed alpha
Helix 12	12	B	148	162	Right-handed alpha
Helix 13	13	B	164	173	Right-handed alpha
Helix 14	14	B	179	187	Right-handed alpha
Helix 15	15	C	23	30	Right-handed alpha
Helix 16	16	C	40	58	Right-handed alpha
Helix 17	17	C	73	87	Right-handed alpha
Helix 18	18	C	101	109	Right-handed alpha
Helix 19	19	C	148	162	Right-handed alpha
Helix 20	20	C	164	172	Right-handed alpha
Helix 21	21	C	180	186	Right-handed alpha
Helix 22	22	D	22	29	Right-handed alpha
Helix 23	23	D	40	58	Right-handed alpha
Helix 24	24	D	73	87	Right-handed alpha
Helix 25	25	D	101	109	Right-handed alpha
Helix 26	26	D	144	147	Right-handed 310
Helix 27	27	D	148	162	Right-handed alpha
Helix 28	28	D	164	173	Right-handed alpha
Helix 29	29	D	180	187	Right-handed alpha
Helix 30	30	E	22	30	Right-handed alpha
Helix 31	31	E	40	58	Right-handed alpha
Helix 32	32	E	73	86	Right-handed alpha
Helix 33	33	E	101	109	Right-handed alpha
Helix 34	34	E	143	147	Right-handed 310
Helix 35	35	E	148	162	Right-handed alpha
Helix 36	36	E	164	173	Right-handed alpha
Helix 37	37	E	179	187	Right-handed alpha
Helix 38	38	F	23	29	Right-handed alpha
Helix 39	39	F	40	58	Right-handed alpha
Helix 40	40	F	73	87	Right-handed alpha
Helix 41	41	F	101	109	Right-handed alpha
Helix 42	42	F	148	162	Right-handed alpha
Helix 43	43	F	164	174	Right-handed alpha
Helix 44	44	F	180	186	Right-handed alpha
Helix 45	45	G	22	29	Right-handed alpha
Helix 46	46	G	40	58	Right-handed alpha
Helix 47	47	G	73	87	Right-handed alpha
Helix 48	48	G	101	109	Right-handed alpha
Helix 49	49	G	148	162	Right-handed alpha
Helix 50	50	G	164	173	Right-handed alpha
Helix 51	51	G	180	186	Right-handed alpha

There are 17 sheets in PDB entry 5G1Q. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, EA, EB, FA, FB, FC, GA, GB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	20	22	anti-parallel
Strand 3	G	10	11	anti-parallel
Strand 4	G	20	21	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	63	69	parallel
Strand 3	A	91	100	parallel
Strand 4	A	122	124	parallel
Strand 5	A	177	179	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	63	69	parallel
Strand 3	A	91	100	parallel
Strand 4	A	115	117	anti-parallel
Strand 5	A	191	192	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	20	22	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	63	69	parallel
Strand 3	B	91	99	parallel
Strand 4	B	122	124	parallel
Strand 5	B	177	178	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	63	69	parallel
Strand 3	B	91	99	parallel
Strand 4	B	115	117	anti-parallel
Strand 5	B	191	192	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	21	22	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	63	69	parallel
Strand 3	C	91	99	parallel
Strand 4	C	122	124	parallel
Strand 5	C	177	179	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	63	69	parallel
Strand 3	C	91	99	parallel
Strand 4	C	115	117	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	63	69	parallel
Strand 3	D	91	100	parallel
Strand 4	D	122	124	parallel
Strand 5	D	178	179	anti-parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	36	first strand
Strand 2	E	63	69	parallel
Strand 3	E	91	100	parallel
Strand 4	E	122	124	parallel
Strand 5	E	177	178	anti-parallel

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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	36	first strand
Strand 2	E	63	69	parallel
Strand 3	E	91	100	parallel
Strand 4	E	115	117	anti-parallel
Strand 5	E	191	192	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	10	first strand
Strand 2	F	21	22	anti-parallel

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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	63	69	parallel
Strand 3	F	91	100	parallel
Strand 4	F	122	124	parallel
Strand 5	F	177	179	anti-parallel

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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	63	69	parallel
Strand 3	F	91	100	parallel
Strand 4	F	115	117	anti-parallel
Strand 5	F	191	192	parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	36	first strand
Strand 2	G	63	69	parallel
Strand 3	G	91	100	parallel
Strand 4	G	122	124	parallel
Strand 5	G	177	179	anti-parallel

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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	36	first strand
Strand 2	G	63	69	parallel
Strand 3	G	91	100	parallel
Strand 4	G	115	117	anti-parallel
Strand 5	G	191	192	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5G1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1Q