Analysis of interatomic Contacts of Structural Units in PDB entry:
5G1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G1V entry

There are 5 chains in PDB entry 5G1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4PRO 365
B
 GLU 3PRO 365
C
 GLU 3PRO 365
D
 LEU 4PRO 365
E
 LEU 4PRO 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 5G1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
25 37Right-handed alpha
Helix 3
3
A
51 57Right-handed alpha
Helix 4
4
A
60 62Right-handed 310
Helix 5
5
A
63 82Right-handed alpha
Helix 6
6
A
85 101Right-handed alpha
Helix 7
7
A
102 107Right-handed alpha
Helix 8
8
A
107 112Right-handed alpha
Helix 9
9
A
123 142Right-handed alpha
Helix 10
10
A
146 164Right-handed alpha
Helix 11
11
A
177 196Right-handed alpha
Helix 12
12
A
198 201Right-handed 310
Helix 13
13
A
202 211Right-handed alpha
Helix 14
14
A
238 250Right-handed alpha
Helix 15
15
A
253 268Right-handed alpha
Helix 16
16
A
295 308Right-handed alpha
Helix 17
17
A
309 321Right-handed alpha
Helix 18
18
A
322 324Right-handed 310
Helix 19
19
A
342 353Right-handed alpha
Helix 20
20
A
355 361Right-handed alpha
Helix 21
21
B
11 22Right-handed alpha
Helix 22
22
B
25 37Right-handed alpha
Helix 23
23
B
51 57Right-handed alpha
Helix 24
24
B
60 62Right-handed 310
Helix 25
25
B
63 82Right-handed alpha
Helix 26
26
B
85 101Right-handed alpha
Helix 27
27
B
102 107Right-handed alpha
Helix 28
28
B
107 112Right-handed alpha
Helix 29
29
B
123 142Right-handed alpha
Helix 30
30
B
146 164Right-handed alpha
Helix 31
31
B
177 196Right-handed alpha
Helix 32
32
B
198 201Right-handed 310
Helix 33
33
B
202 214Right-handed alpha
Helix 34
34
B
238 251Right-handed alpha
Helix 35
35
B
253 268Right-handed alpha
Helix 36
36
B
295 308Right-handed alpha
Helix 37
37
B
309 321Right-handed alpha
Helix 38
38
B
322 324Right-handed 310
Helix 39
39
B
342 353Right-handed alpha
Helix 40
40
B
355 361Right-handed alpha
Helix 41
41
C
11 22Right-handed alpha
Helix 42
42
C
25 37Right-handed alpha
Helix 43
43
C
51 57Right-handed alpha
Helix 44
44
C
60 62Right-handed 310
Helix 45
45
C
63 82Right-handed alpha
Helix 46
46
C
85 101Right-handed alpha
Helix 47
47
C
102 107Right-handed alpha
Helix 48
48
C
107 112Right-handed alpha
Helix 49
49
C
123 142Right-handed alpha
Helix 50
50
C
146 164Right-handed alpha
Helix 51
51
C
177 196Right-handed alpha
Helix 52
52
C
198 201Right-handed 310
Helix 53
53
C
202 211Right-handed alpha
Helix 54
54
C
238 251Right-handed alpha
Helix 55
55
C
253 268Right-handed alpha
Helix 56
56
C
295 307Right-handed alpha
Helix 57
57
C
309 321Right-handed alpha
Helix 58
58
C
322 324Right-handed 310
Helix 59
59
C
342 353Right-handed alpha
Helix 60
60
C
355 361Right-handed alpha
Helix 61
61
D
11 22Right-handed alpha
Helix 62
62
D
25 37Right-handed alpha
Helix 63
63
D
51 57Right-handed alpha
Helix 64
64
D
60 62Right-handed 310
Helix 65
65
D
63 82Right-handed alpha
Helix 66
66
D
85 101Right-handed alpha
Helix 67
67
D
102 107Right-handed alpha
Helix 68
68
D
107 112Right-handed alpha
Helix 69
69
D
123 142Right-handed alpha
Helix 70
70
D
146 164Right-handed alpha
Helix 71
71
D
177 196Right-handed alpha
Helix 72
72
D
198 201Right-handed 310
Helix 73
73
D
202 211Right-handed alpha
Helix 74
74
D
238 251Right-handed alpha
Helix 75
75
D
253 268Right-handed alpha
Helix 76
76
D
295 308Right-handed alpha
Helix 77
77
D
309 321Right-handed alpha
Helix 78
78
D
322 324Right-handed 310
Helix 79
79
D
342 353Right-handed alpha
Helix 80
80
D
355 361Right-handed alpha
Helix 81
81
E
11 22Right-handed alpha
Helix 82
82
E
25 37Right-handed alpha
Helix 83
83
E
51 57Right-handed alpha
Helix 84
84
E
60 62Right-handed 310
Helix 85
85
E
63 82Right-handed alpha
Helix 86
86
E
85 101Right-handed alpha
Helix 87
87
E
102 107Right-handed alpha
Helix 88
88
E
107 112Right-handed alpha
Helix 89
89
E
123 142Right-handed alpha
Helix 90
90
E
146 164Right-handed alpha
Helix 91
91
E
177 196Right-handed alpha
Helix 92
92
E
198 201Right-handed 310
Helix 93
93
E
202 211Right-handed alpha
Helix 94
94
E
238 251Right-handed alpha
Helix 95
95
E
253 268Right-handed alpha
Helix 96
96
E
295 308Right-handed alpha
Helix 97
97
E
309 321Right-handed alpha
Helix 98
98
E
322 324Right-handed 310
Helix 99
99
E
342 353Right-handed alpha
Helix 100
100
E
355 361Right-handed alpha
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There are 20 sheets in PDB entry 5G1V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
277 280anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
332 335anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
221 222anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
232 233anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
277 280anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
332 335anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 216first strand
Strand 2
C
221 222anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 227first strand
Strand 2
C
232 233anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 272first strand
Strand 2
C
277 280anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
326 329first strand
Strand 2
C
332 335anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
215 216first strand
Strand 2
D
221 222anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
226 227first strand
Strand 2
D
232 233anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
269 272first strand
Strand 2
D
277 280anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
326 328first strand
Strand 2
D
333 335anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
215 216first strand
Strand 2
E
221 222anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
226 227first strand
Strand 2
E
232 233anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
269 272first strand
Strand 2
E
277 280anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
326 329first strand
Strand 2
E
332 335anti-parallel
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