Analysis of interatomic Contacts of Structural Units in PDB entry:
5G2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G2M entry

There are 2 chains in PDB entry 5G2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ASP 332
B
 HIS -1ASP 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5G2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 23Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
39 54Right-handed alpha
Helix 4
4
A
80 86Right-handed alpha
Helix 5
5
A
89 107Right-handed alpha
Helix 6
6
A
128 132Right-handed 310
Helix 7
7
A
136 154Right-handed alpha
Helix 8
8
A
183 190Right-handed alpha
Helix 9
9
A
192 198Right-handed alpha
Helix 10
10
A
223 228Right-handed alpha
Helix 11
11
A
229 235Right-handed alpha
Helix 12
12
A
256 268Right-handed alpha
Helix 13
13
A
277 292Right-handed alpha
Helix 14
14
A
296 303Right-handed 310
Helix 15
15
A
315 328Right-handed alpha
Helix 16
16
B
15 23Right-handed alpha
Helix 17
17
B
33 37Right-handed 310
Helix 18
18
B
39 52Right-handed alpha
Helix 19
19
B
80 86Right-handed alpha
Helix 20
20
B
89 107Right-handed alpha
Helix 21
21
B
128 132Right-handed 310
Helix 22
22
B
136 154Right-handed alpha
Helix 23
23
B
183 190Right-handed alpha
Helix 24
24
B
192 198Right-handed alpha
Helix 25
25
B
223 228Right-handed alpha
Helix 26
26
B
256 268Right-handed alpha
Helix 27
27
B
277 292Right-handed alpha
Helix 28
28
B
296 303Right-handed 310
Helix 29
29
B
315 328Right-handed alpha
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There are 8 sheets in PDB entry 5G2M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
A
293 294parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
27 32parallel
Strand 3
A
4 7parallel
Strand 4
A
271 273parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
204 207parallel
Strand 3
A
240 241parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
216 219anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 2first strand
Strand 2
B
293 294parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
58 61parallel
Strand 3
B
27 31parallel
Strand 4
B
4 7parallel
Strand 5
B
271 273parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 163first strand
Strand 2
B
204 207parallel
Strand 3
B
240 241parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
216 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il