Analysis of interatomic Contacts of Structural Units in PDB entry:
5G2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G2P entry

There are 4 chains in PDB entry 5G2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7GLN 474
B
 LYS 7TRP 473
C
 LYS 7TRP 473
D
 LYS 7TRP 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5G2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
56 61Right-handed alpha
Helix 3
3
A
68 79Right-handed alpha
Helix 4
4
A
91 104Right-handed alpha
Helix 5
5
A
120 137Right-handed alpha
Helix 6
6
A
152 158Right-handed alpha
Helix 7
7
A
213 227Right-handed alpha
Helix 8
8
A
250 263Right-handed alpha
Helix 9
9
A
282 288Right-handed 310
Helix 10
10
A
297 301Right-handed 310
Helix 11
11
A
314 322Right-handed alpha
Helix 12
12
A
334 351Right-handed alpha
Helix 13
13
A
352 375Right-handed alpha
Helix 14
14
A
404 408Right-handed 310
Helix 15
15
A
413 416Right-handed 310
Helix 16
16
A
417 428Right-handed alpha
Helix 17
17
A
450 470Right-handed alpha
Helix 18
18
B
9 21Right-handed alpha
Helix 19
19
B
56 61Right-handed alpha
Helix 20
20
B
68 79Right-handed alpha
Helix 21
21
B
91 104Right-handed alpha
Helix 22
22
B
120 137Right-handed alpha
Helix 23
23
B
152 158Right-handed alpha
Helix 24
24
B
213 227Right-handed alpha
Helix 25
25
B
250 263Right-handed alpha
Helix 26
26
B
282 287Right-handed 310
Helix 27
27
B
297 301Right-handed 310
Helix 28
28
B
314 322Right-handed alpha
Helix 29
29
B
334 351Right-handed alpha
Helix 30
30
B
352 375Right-handed alpha
Helix 31
31
B
404 408Right-handed 310
Helix 32
32
B
413 416Right-handed 310
Helix 33
33
B
417 428Right-handed alpha
Helix 34
34
B
450 471Right-handed alpha
Helix 35
35
C
9 21Right-handed alpha
Helix 36
36
C
56 61Right-handed alpha
Helix 37
37
C
68 82Right-handed alpha
Helix 38
38
C
91 104Right-handed alpha
Helix 39
39
C
120 137Right-handed alpha
Helix 40
40
C
152 158Right-handed alpha
Helix 41
41
C
213 227Right-handed alpha
Helix 42
42
C
250 263Right-handed alpha
Helix 43
43
C
282 287Right-handed 310
Helix 44
44
C
297 301Right-handed 310
Helix 45
45
C
314 322Right-handed alpha
Helix 46
46
C
334 351Right-handed alpha
Helix 47
47
C
352 375Right-handed alpha
Helix 48
48
C
404 408Right-handed 310
Helix 49
49
C
413 416Right-handed 310
Helix 50
50
C
417 429Right-handed alpha
Helix 51
51
C
450 470Right-handed alpha
Helix 52
52
D
9 21Right-handed alpha
Helix 53
53
D
56 61Right-handed alpha
Helix 54
54
D
68 79Right-handed alpha
Helix 55
55
D
91 104Right-handed alpha
Helix 56
56
D
120 137Right-handed alpha
Helix 57
57
D
152 158Right-handed alpha
Helix 58
58
D
213 227Right-handed alpha
Helix 59
59
D
250 263Right-handed alpha
Helix 60
60
D
282 288Right-handed 310
Helix 61
61
D
297 301Right-handed 310
Helix 62
62
D
314 322Right-handed alpha
Helix 63
63
D
334 351Right-handed alpha
Helix 64
64
D
352 375Right-handed alpha
Helix 65
65
D
404 408Right-handed 310
Helix 66
66
D
413 416Right-handed 310
Helix 67
67
D
417 428Right-handed alpha
Helix 68
68
D
450 471Right-handed alpha
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There are 16 sheets in PDB entry 5G2P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, CA, CB, CC, CD, CE, A, DB, C,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
43 45anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
431 432parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 118first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
293 296anti-parallel
Strand 4
A
265 269parallel
Strand 5
A
231 236parallel
Strand 6
A
140 144parallel
Strand 7
A
189 192parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
B
324 325anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
B
168 169anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 384first strand
Strand 2
A
387 392anti-parallel
Strand 3
A
440 443anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
43 45anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
431 432parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 118first strand
Strand 2
B
308 313anti-parallel
Strand 3
B
293 296anti-parallel
Strand 4
B
265 269parallel
Strand 5
B
231 236parallel
Strand 6
B
140 144parallel
Strand 7
B
189 192parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 384first strand
Strand 2
B
387 392anti-parallel
Strand 3
B
440 443anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
43 45anti-parallel
Strand 3
C
51 54anti-parallel
Strand 4
C
431 432parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 118first strand
Strand 2
C
308 313anti-parallel
Strand 3
C
293 296anti-parallel
Strand 4
C
265 269parallel
Strand 5
C
231 236parallel
Strand 6
C
140 144parallel
Strand 7
C
189 192parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
D
324 325anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 325first strand
Strand 2
D
168 169anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 384first strand
Strand 2
C
387 392anti-parallel
Strand 3
C
440 443anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
43 45anti-parallel
Strand 3
D
51 54anti-parallel
Strand 4
D
431 432parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 118first strand
Strand 2
D
308 313anti-parallel
Strand 3
D
293 296anti-parallel
Strand 4
D
265 269parallel
Strand 5
D
231 236parallel
Strand 6
D
140 144parallel
Strand 7
D
189 192parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
378 384first strand
Strand 2
D
387 392anti-parallel
Strand 3
D
440 443anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il