Analysis of interatomic Contacts of Structural Units in PDB entry:
5G2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G2T entry

There are 4 chains in PDB entry 5G2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19ILE 485
B
 ARG 19ILE 485
C
 GLU 22LEU 486
D
 GLU 22ILE 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 95 helices in PDB entry 5G2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
49 59Right-handed alpha
Helix 3
3
A
71 82Right-handed alpha
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
108 116Right-handed alpha
Helix 6
6
A
153 172Right-handed alpha
Helix 7
7
A
189 197Right-handed alpha
Helix 8
8
A
221 225Right-handed 310
Helix 9
9
A
226 231Right-handed alpha
Helix 10
10
A
231 236Right-handed alpha
Helix 11
11
A
236 243Right-handed alpha
Helix 12
12
A
246 276Right-handed alpha
Helix 13
13
A
280 282Right-handed 310
Helix 14
14
A
297 301Right-handed 310
Helix 15
15
A
309 314Right-handed alpha
Helix 16
16
A
337 351Right-handed alpha
Helix 17
17
A
363 369Right-handed alpha
Helix 18
18
A
409 411Right-handed 310
Helix 19
19
A
431 433Right-handed 310
Helix 20
20
A
434 453Right-handed alpha
Helix 21
21
A
455 459Right-handed 310
Helix 22
22
A
464 468Right-handed 310
Helix 23
23
A
473 477Right-handed 310
Helix 24
24
A
481 485Right-handed 310
Helix 25
25
B
39 43Right-handed 310
Helix 26
26
B
49 59Right-handed alpha
Helix 27
27
B
71 82Right-handed alpha
Helix 28
28
B
84 89Right-handed alpha
Helix 29
29
B
108 116Right-handed alpha
Helix 30
30
B
153 172Right-handed alpha
Helix 31
31
B
189 197Right-handed alpha
Helix 32
32
B
221 225Right-handed 310
Helix 33
33
B
226 231Right-handed alpha
Helix 34
34
B
231 236Right-handed alpha
Helix 35
35
B
236 243Right-handed alpha
Helix 36
36
B
246 276Right-handed alpha
Helix 37
37
B
280 282Right-handed 310
Helix 38
38
B
297 301Right-handed 310
Helix 39
39
B
309 314Right-handed alpha
Helix 40
40
B
337 351Right-handed alpha
Helix 41
41
B
363 369Right-handed alpha
Helix 42
42
B
409 411Right-handed 310
Helix 43
43
B
431 433Right-handed 310
Helix 44
44
B
434 453Right-handed alpha
Helix 45
45
B
455 459Right-handed 310
Helix 46
46
B
464 468Right-handed 310
Helix 47
47
B
473 477Right-handed 310
Helix 48
48
C
39 43Right-handed 310
Helix 49
49
C
49 58Right-handed alpha
Helix 50
50
C
71 82Right-handed alpha
Helix 51
51
C
84 89Right-handed alpha
Helix 52
52
C
108 115Right-handed alpha
Helix 53
53
C
153 172Right-handed alpha
Helix 54
54
C
189 197Right-handed alpha
Helix 55
55
C
221 225Right-handed 310
Helix 56
56
C
226 231Right-handed alpha
Helix 57
57
C
231 236Right-handed alpha
Helix 58
58
C
236 243Right-handed alpha
Helix 59
59
C
246 276Right-handed alpha
Helix 60
60
C
280 282Right-handed 310
Helix 61
61
C
297 301Right-handed 310
Helix 62
62
C
309 314Right-handed alpha
Helix 63
63
C
337 351Right-handed alpha
Helix 64
64
C
363 369Right-handed alpha
Helix 65
65
C
409 411Right-handed 310
Helix 66
66
C
431 433Right-handed 310
Helix 67
67
C
434 453Right-handed alpha
Helix 68
68
C
455 459Right-handed 310
Helix 69
69
C
464 468Right-handed 310
Helix 70
70
C
473 477Right-handed 310
Helix 71
71
C
481 486Right-handed alpha
Helix 72
72
D
39 43Right-handed 310
Helix 73
73
D
49 59Right-handed alpha
Helix 74
74
D
71 82Right-handed alpha
Helix 75
75
D
84 89Right-handed alpha
Helix 76
76
D
108 115Right-handed alpha
Helix 77
77
D
153 172Right-handed alpha
Helix 78
78
D
189 197Right-handed alpha
Helix 79
79
D
221 225Right-handed 310
Helix 80
80
D
226 231Right-handed alpha
Helix 81
81
D
231 236Right-handed alpha
Helix 82
82
D
236 243Right-handed alpha
Helix 83
83
D
246 276Right-handed alpha
Helix 84
84
D
280 282Right-handed 310
Helix 85
85
D
297 301Right-handed 310
Helix 86
86
D
309 314Right-handed alpha
Helix 87
87
D
337 351Right-handed alpha
Helix 88
88
D
363 368Right-handed alpha
Helix 89
89
D
409 411Right-handed 310
Helix 90
90
D
431 433Right-handed 310
Helix 91
91
D
434 453Right-handed alpha
Helix 92
92
D
455 459Right-handed 310
Helix 93
93
D
464 468Right-handed 310
Helix 94
94
D
473 477Right-handed 310
Helix 95
95
D
481 485Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5G2T. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
317 320anti-parallel
Strand 3
A
284 289anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
178 184parallel
Strand 6
A
119 124parallel
Strand 7
A
136 138parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 385first strand
Strand 2
A
391 398anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
412 417anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
317 320anti-parallel
Strand 3
B
284 289anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
178 184parallel
Strand 6
B
119 124parallel
Strand 7
B
136 138parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 385first strand
Strand 2
B
391 398anti-parallel
Strand 3
B
402 407anti-parallel
Strand 4
B
412 417anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
317 320anti-parallel
Strand 3
C
284 289anti-parallel
Strand 4
C
25 31parallel
Strand 5
C
178 184parallel
Strand 6
C
119 124parallel
Strand 7
C
136 138parallel
Back to list of sheets
Back to top of page

There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
379 385first strand
Strand 2
C
391 398anti-parallel
Strand 3
C
402 407anti-parallel
Strand 4
C
412 417anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
317 320anti-parallel
Strand 3
D
284 289anti-parallel
Strand 4
D
25 31parallel
Strand 5
D
178 184parallel
Strand 6
D
119 124parallel
Strand 7
D
136 138parallel
Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
379 385first strand
Strand 2
D
391 398anti-parallel
Strand 3
D
402 407anti-parallel
Strand 4
D
412 417anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il